View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4425_high_3 (Length: 509)
Name: NF4425_high_3
Description: NF4425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4425_high_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 11 - 509
Target Start/End: Complemental strand, 5020288 - 5019782
Alignment:
| Q |
11 |
caaagggtgagtaagataggattaaaaatgagtttaatgtatcnnnnnnnattggtctacaaaacaccggattaaatcaagatatgatatctctatcatg |
110 |
Q |
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| T |
5020288 |
caaagggtgagtaagataggattaaaaatgagtttaatgtatccttttttattggtccacaaaacaccggattaaattaggatatgatatctctatcatg |
5020189 |
T |
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| Q |
111 |
tgtagcaaacatatccttagtatcttaacaacaaaaagactaaaataacaaattttatataatttacatattatatatcccttttatacattttgaaaaa |
210 |
Q |
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| T |
5020188 |
tgtaccaaacagatccttagtatcttaacaacaaaaagactaaaataacaaattttatatactttacatattataaatcccttttatacattttgaaaaa |
5020089 |
T |
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| Q |
211 |
taagttgaagagaaaatgatatttcaaaaacaagtttatttgataaattcattgcaacttttcacagatcaattttctagatcagtattgctgatgtgtt |
310 |
Q |
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| T |
5020088 |
taagttgaagagaaaatgatatttcaaaagcaagtttatttgataaattcattgcaacttttcacagatcaattttctagatcagtattgctgatgtgtt |
5019989 |
T |
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| Q |
311 |
catcacctcgtactg-ttgtgcacaatagatgcataatttaggctttatgcttcctaaatcctaattaaagaaccaaaaaagagaagcataccctagtag |
409 |
Q |
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| T |
5019988 |
catcacctcatactgtttgtgcacaatagatgcataatttaggctttatgcttcctaaatcctaattaaagaaccaaaaaagagaagcataccctagtag |
5019889 |
T |
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| Q |
410 |
tgtctgcctcaaacgtaaacatagttacaacccacag-------tactgactaggacagaatcgatctttttatctcacaatcatagctcaaaattcatg |
502 |
Q |
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| T |
5019888 |
tgtctgcctcaaacgtaaagatagttacaacccacagtactgactactgactaggacagaatcgatctttttatctcacaatcatagctcaaaattcatg |
5019789 |
T |
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| Q |
503 |
aactagc |
509 |
Q |
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| T |
5019788 |
aactagc |
5019782 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 129142 - 129178
Alignment:
| Q |
11 |
caaagggtgagtaagataggattaaaaatgagtttaa |
47 |
Q |
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| T |
129142 |
caaagggtgaatatgataggattaaaaatgagtttaa |
129178 |
T |
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