View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4425_high_4 (Length: 363)
Name: NF4425_high_4
Description: NF4425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4425_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 13726488 - 13726156
Alignment:
| Q |
1 |
gcaccacacatcttagtgttaccgtatccattacaaggccacataaaccctatgcttcaattctcaaaacgtttatcccaaaatggagtaaaaatcacac |
100 |
Q |
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| T |
13726488 |
gcaccacacatcttagtgtttccatatccattacaaggtcacataaaccctatgcttcaattctcgaaacgtttatcccaaaaaggagtaaaaataacac |
13726389 |
T |
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| Q |
101 |
tagtgaacaccatttccatttggaacaaaatcaacaacaacattgatctaaattcaattcaaactgaaagcatttcagatggttatgacaatggaggaat |
200 |
Q |
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| T |
13726388 |
tagtgaacaccatttccatttggaacaaaatcaacaacaacattgatctcaattcaattgaaactgaaagcatttcagatggttatgacaatggaggaat |
13726289 |
T |
|
| Q |
201 |
gtcatcagcagaaaatatggaatcttacaaagacactttctggaaagttggaccaaaatcactttctcagcttcttcataaacttcaaagttcaaacaac |
300 |
Q |
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| T |
13726288 |
gtcatcagcagaaaacatggaatcttacaaagacactttctggaaagttggaccaaaatcactttctcagcttcttcataaacttcaaagttcaaacaac |
13726189 |
T |
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| Q |
301 |
cctgttgattgtgttgtctatgatgctttctta |
333 |
Q |
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| T |
13726188 |
cctgttgattgtgttgtctatgatgctttctta |
13726156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 13697432 - 13697352
Alignment:
| Q |
33 |
acaaggccacataaaccctatgcttcaattctcaaaacgtttatcccaaaatggagtaaaaatcacactagtgaacaccat |
113 |
Q |
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| T |
13697432 |
acaaggtcacataaacccaatgcttcaattctcaaaacgtttactccaaaaaggactaaaagtcacactagtaaacaccat |
13697352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 13686360 - 13686416
Alignment:
| Q |
19 |
ttaccgtatccattacaaggccacataaaccctatgcttcaattctcaaaacgttta |
75 |
Q |
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| T |
13686360 |
ttaccttatccagcacaaggccacatgaaccctatgattcaattctcaaaacgttta |
13686416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 30848246 - 30848197
Alignment:
| Q |
16 |
gtgttaccgtatccattacaaggccacataaaccctatgcttcaattctc |
65 |
Q |
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| T |
30848246 |
gtgttatcatatccattacaaggtcacataaatccaatgcttcaattctc |
30848197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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