View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4425_low_1 (Length: 406)

Name: NF4425_low_1
Description: NF4425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4425_low_1
NF4425_low_1
[»] chr4 (17 HSPs)
chr4 (84-262)||(36935970-36936148)
chr4 (108-302)||(35097655-35097856)
chr4 (138-302)||(35072826-35072997)
chr4 (138-302)||(35106863-35107034)
chr4 (108-302)||(36940621-36940821)
chr4 (111-302)||(36961217-36961403)
chr4 (138-302)||(36296599-36296770)
chr4 (305-388)||(36935891-36935975)
chr4 (306-388)||(35072714-35072796)
chr4 (301-380)||(35097881-35097960)
chr4 (301-380)||(35098170-35098249)
chr4 (201-302)||(35098037-35098145)
chr4 (301-394)||(36940503-36940596)
chr4 (309-388)||(36296487-36296566)
chr4 (306-361)||(35107064-35107119)
chr4 (138-253)||(35072042-35072157)
chr4 (301-339)||(36953724-36953762)
[»] chr6 (4 HSPs)
chr6 (138-300)||(24014327-24014496)
chr6 (138-302)||(24040882-24041053)
chr6 (309-388)||(24014213-24014292)
chr6 (306-388)||(24040770-24040852)
[»] chr1 (1 HSPs)
chr1 (108-250)||(3123046-3123188)
[»] chr5 (2 HSPs)
chr5 (141-253)||(26578963-26579075)
chr5 (301-364)||(34919157-34919220)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 84 - 262
Target Start/End: Complemental strand, 36936148 - 36935970
Alignment:
Q  84 aaattgaagagaagatgtcactgagagaattctgcattcctgagcacacgtgtggattggaaggagaccccagaagcacatgtgttcaaggcggatcttc 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  36936148 aaattgaagagaagatgtcactgagagaattctgcattcctgagcacacgtgtggattggaaggagaccccagaagtagatgtgttcaaggcggatcttc 36936049  T
Q  184 caggaatgaagaaggaggaagtgaaagtagagattgaagatgatagggttcttcagataagcggagagagaaatgagaa 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36936048 caggaatgaagaaggaggaagtgaaagtagagattgaagatgatatggttcttcagataagcggagagagaaatgagaa 36935970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 108 - 302
Target Start/End: Original strand, 35097655 - 35097856
Alignment:
Q  108 gagaattctgcattcctgagcacacgtgtggattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtga 207  Q
    ||||||||||||||    |||||||  |||||||||||||||||||||||||||||||||||| |||| |||||||| ||| |||||||||| |||||||    
T  35097655 gagaattctgcatttgcaagcacacaagtggattggaaggagaccccagaagcacatgtgttcgaggctgatcttcctggactgaagaaggaagaagtga 35097754  T
Q  208 aagtagagattgaagatgatagggttcttcagataagcggagagagaaatg-------agaagataagaacgatcaatggcatcgcgtggagcgtagcag 300  Q
    | || || ||||||| |||||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||| ||||||||||||||    
T  35097755 aggttgaaattgaaggtgatagggttcttcagataagcggagagaggaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcag 35097854  T
Q  301 tg 302  Q
    ||    
T  35097855 tg 35097856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 138 - 302
Target Start/End: Complemental strand, 35072997 - 35072826
Alignment:
Q  138 gattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtgaaagtagagattgaagatgatagggttcttc 237  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||| ||| ||||||||||||||||||| || || ||||||||||||||||||||||    
T  35072997 gattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttc 35072898  T
Q  238 agataagcggagagagaaa---tg----agaagataagaacgatcaatggcatcgcgtggagcgtagcagtg 302  Q
    |||||||||| ||||| ||   ||    |||||||||||| |||||||||||||| ||||||||||||||||    
T  35072897 agataagcggtgagaggaacattgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtg 35072826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 138 - 302
Target Start/End: Original strand, 35106863 - 35107034
Alignment:
Q  138 gattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtgaaagtagagattgaagatgatagggttcttc 237  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||| ||| ||||||||||||||||||| || || ||||||||||||||||||||||    
T  35106863 gattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttc 35106962  T
Q  238 agataagcggagagagaaa---tg----agaagataagaacgatcaatggcatcgcgtggagcgtagcagtg 302  Q
    |||||||||| ||||| ||   ||    |||||||||||| |||||||||||||| ||||||||||||||||    
T  35106963 agataagcggtgagaggaactttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtg 35107034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 108 - 302
Target Start/End: Complemental strand, 36940821 - 36940621
Alignment:
Q  108 gagaattctgcattcctgagcacacgtgtggattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtga 207  Q
    |||| |||||||||  ||||||||| ||||||||||||| |||| || | |||||| |||||||| || ||| |||||||||||||||||||||||| ||    
T  36940821 gagagttctgcatttgtgagcacacatgtggattggaag-agactcctggagcacacgtgttcaatgctgattttccaggaatgaagaaggaggaagcga 36940723  T
Q  208 aagtagagattgaagatgatagggttcttcagataagcggagagagaaatg-------agaagataagaacgatcaatggcatcgcgtggagcgtagcag 300  Q
    ||||||||||||||||||||||||||||||||||||| ||| | ||||  |       |||||||||||||||||||||||||| |||||||||||||||    
T  36940722 aagtagagattgaagatgatagggttcttcagataagtggaaaaagaagcgttgagaaagaagataagaacgatcaatggcatcccgtggagcgtagcag 36940623  T
Q  301 tg 302  Q
    ||    
T  36940622 tg 36940621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 111 - 302
Target Start/End: Original strand, 36961217 - 36961403
Alignment:
Q  111 aattctgcattcctgagcacacgtgtggattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtgaaag 210  Q
    ||||| ||||||||||||||||||||||||||||||||||| | |||||| || |||||||||||||||||||| ||||||||||||            |    
T  36961217 aattcagcattcctgagcacacgtgtggattggaaggagactcgagaagcgcacgtgttcaaggcggatcttccgggaatgaagaag------------g 36961304  T
Q  211 tagagattgaagatgatagggttcttcagataagcggagagagaaatg-------agaagataagaacgatcaatggcatcgcgtggagcgtagcagtg 302  Q
    |||||||||||| |||||||||||||||||| |||||||||||||  |       ||||||||||||| || |||||||| ||||||||| ||||||||    
T  36961305 tagagattgaagttgatagggttcttcagatcagcggagagagaagcgttgagaaagaagataagaacaatgaatggcattgcgtggagcttagcagtg 36961403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 138 - 302
Target Start/End: Complemental strand, 36296770 - 36296599
Alignment:
Q  138 gattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtgaaagtagagattgaagatgatagggttcttc 237  Q
    |||||||||||||||||||||||||| ||||| || || |||||||| ||| |||||||||| |||||||| || || ||||||||||| || |||||||    
T  36296770 gattggaaggagaccccagaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttc 36296671  T
Q  238 agataagcggagagagaaatg-------agaagataagaacgatcaatggcatcgcgtggagcgtagcagtg 302  Q
    |||| || |||||||| || |       |||||| |||||| | ||||||||||||||||||||||||||||    
T  36296670 agattagtggagagaggaacgttgagaaagaagacaagaacaaccaatggcatcgcgtggagcgtagcagtg 36296599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 305 - 388
Target Start/End: Complemental strand, 36935975 - 36935891
Alignment:
Q  305 tgagaatgctaaaatggatcaagtgaaagctgcaac-ggagaatggtgttctcactgttaccgtgccaaaagaagaggttaagaa 388  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36935975 tgagaatgctaaaatggatcaagtgaaagctgcaattggagaatggtgttctcactgttaccgtgccacaagaagaggttaagaa 36935891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 306 - 388
Target Start/End: Complemental strand, 35072796 - 35072714
Alignment:
Q  306 gagaatgctaaaatggatcaagtgaaagctgcaacggagaatggtgttctcactgttaccgtgccaaaagaagaggttaagaa 388  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||||||    
T  35072796 gagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaa 35072714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 301 - 380
Target Start/End: Original strand, 35097881 - 35097960
Alignment:
Q  301 tgcctgagaatgctaaaatggatcaagtgaaagctgcaacggagaatggtgttctcactgttaccgtgccaaaagaagag 380  Q
    ||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| || ||||||||||||    
T  35097881 tgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagag 35097960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 301 - 380
Target Start/End: Original strand, 35098170 - 35098249
Alignment:
Q  301 tgcctgagaatgctaaaatggatcaagtgaaagctgcaacggagaatggtgttctcactgttaccgtgccaaaagaagag 380  Q
    ||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| || ||||||||||||    
T  35098170 tgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagag 35098249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 201 - 302
Target Start/End: Original strand, 35098037 - 35098145
Alignment:
Q  201 gaagtgaaagtagagattgaagatgatagggttcttcagataagcggagagagaaatg-------agaagataagaacgatcaatggcatcgcgtggagc 293  Q
    |||||||| || || ||||||| |||||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||| |||||||    
T  35098037 gaagtgaaggttgaaattgaaggtgatagggttcttcagataagcggagagaggaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagc 35098136  T
Q  294 gtagcagtg 302  Q
    |||||||||    
T  35098137 gtagcagtg 35098145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 394
Target Start/End: Complemental strand, 36940596 - 36940503
Alignment:
Q  301 tgcctgagaatgctaaaatggatcaagtgaaagctgcaacggagaatggtgttctcactgttaccgtgccaaaagaagaggttaagaatgatga 394  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||  |||||||||| || ||||| ||| ||||| | |||||| ||||    
T  36940596 tgcctgagaatgctaaaatggatcaaatgaaagctgcaatggagaatggcattctcactgtcactgtgcctaaaaaagagatcaagaatcatga 36940503  T

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Target: chr4; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 309 - 388
Target Start/End: Complemental strand, 36296566 - 36296487
Alignment:
Q  309 aatgctaaaatggatcaagtgaaagctgcaacggagaatggtgttctcactgttaccgtgccaaaagaagaggttaagaa 388  Q
    ||||| || |||||||| ||||||||||||| ||||||||||||||||||||| || || ||||||||||| ||||||||    
T  36296566 aatgccaagatggatcaggtgaaagctgcaatggagaatggtgttctcactgtaactgttccaaaagaagaagttaagaa 36296487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 361
Target Start/End: Original strand, 35107064 - 35107119
Alignment:
Q  306 gagaatgctaaaatggatcaagtgaaagctgcaacggagaatggtgttctcactgt 361  Q
    |||||||| ||||||||||||||||||||||| | |||||||||||||||| ||||    
T  35107064 gagaatgcgaaaatggatcaagtgaaagctgctatggagaatggtgttctcgctgt 35107119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 253
Target Start/End: Complemental strand, 35072157 - 35072042
Alignment:
Q  138 gattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtgaaagtagagattgaagatgatagggttcttc 237  Q
    ||||||||||| || |||||||| ||||| ||||| || ||| | |||||  |||| || |||||||||||||| ||| |||||||||  || || ||||    
T  35072157 gattggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttc 35072058  T
Q  238 agataagcggagagag 253  Q
    ||||||  ||||||||    
T  35072057 agataacaggagagag 35072042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 36953762 - 36953724
Alignment:
Q  301 tgcctgagaatgctaaaatggatcaagtgaaagctgcaa 339  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  36953762 tgcctgacaatgctaaaacggatcaagtgaaagctgcaa 36953724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 138 - 300
Target Start/End: Complemental strand, 24014496 - 24014327
Alignment:
Q  138 gattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtgaaagtagagattgaagatgatagggttcttc 237  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| || || ||||||| ||||||||||||||    
T  24014496 gattggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaaggtgatagggttcttc 24014397  T
Q  238 agataagcggagagagaaatg-------agaagataagaacgatcaatggcatcgcgtggagcgtagcag 300  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||||||| |||||||| |||||    
T  24014396 agataagcggagagaggaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgcagcag 24014327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 138 - 302
Target Start/End: Complemental strand, 24041053 - 24040882
Alignment:
Q  138 gattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtgaaagtagagattgaagatgatagggttcttc 237  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| |||||||| || || ||||||||||||||||||||||    
T  24041053 gattggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgatagggttcttc 24040954  T
Q  238 agataagcggagagagaaatg-------agaagataagaacgatcaatggcatcgcgtggagcgtagcagtg 302  Q
    |||||||||| ||||| || |       |||||||||||| |||||||||||||| ||||||||||||||||    
T  24040953 agataagcggtgagaggaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtg 24040882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 309 - 388
Target Start/End: Complemental strand, 24014292 - 24014213
Alignment:
Q  309 aatgctaaaatggatcaagtgaaagctgcaacggagaatggtgttctcactgttaccgtgccaaaagaagaggttaagaa 388  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||||||    
T  24014292 aatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaa 24014213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 306 - 388
Target Start/End: Complemental strand, 24040852 - 24040770
Alignment:
Q  306 gagaatgctaaaatggatcaagtgaaagctgcaacggagaatggtgttctcactgttaccgtgccaaaagaagaggttaagaa 388  Q
    |||||||| ||||||||||||||||||||||||| |||||||||| |||||||||| || || || || ||||| ||||||||    
T  24040852 gagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtattctcactgtcactgtccctaaggaagaagttaagaa 24040770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 108 - 250
Target Start/End: Original strand, 3123046 - 3123188
Alignment:
Q  108 gagaattctgcattcctgagcacacgtgtggattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtga 207  Q
    |||||||| |||||  |||||||| | ||||| || ||||| || | |||||||||||||||||| || |||||||||||  |||||||||| || ||||    
T  3123046 gagaattccgcatttgtgagcacaagagtggactgaaaggaaactctagaagcacatgtgttcaaagctgatcttccagggttgaagaaggaagaggtga 3123145  T
Q  208 aagtagagattgaagatgatagggttcttcagataagcggaga 250  Q
    | || || ||||||||||||| |||||||||||||||||||||    
T  3123146 aggttgaaattgaagatgataaggttcttcagataagcggaga 3123188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 253
Target Start/End: Original strand, 26578963 - 26579075
Alignment:
Q  141 tggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtgaaagtagagattgaagatgatagggttcttcaga 240  Q
    |||||||| || || ||||||||  | ||||| || |||||||| ||  ||||||||||||||||||| || ||||||||||| ||| | ||| |  |||    
T  26578963 tggaaggaaacaccggaagcacacatcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagaggatcgtgttttgaaga 26579062  T
Q  241 taagcggagagag 253  Q
    |||| ||||||||    
T  26579063 taagtggagagag 26579075  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 364
Target Start/End: Original strand, 34919157 - 34919220
Alignment:
Q  301 tgcctgagaatgctaaaatggatcaagtgaaagctgcaacggagaatggtgttctcactgttac 364  Q
    |||||||||||| |||||||||||| || |||||||  | ||||||||| ||||| ||||||||    
T  34919157 tgcctgagaatgttaaaatggatcaggttaaagctggtatggagaatggggttcttactgttac 34919220  T

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