View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4426-Insertion-2 (Length: 697)

Name: NF4426-Insertion-2
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4426-Insertion-2
NF4426-Insertion-2
[»] chr6 (2 HSPs)
chr6 (8-697)||(27774937-27775626)
chr6 (587-697)||(12794459-12794570)
[»] chr8 (5 HSPs)
chr8 (25-245)||(8209878-8210100)
chr8 (585-696)||(5214933-5215044)
chr8 (585-697)||(35062802-35062914)
chr8 (588-697)||(30235745-30235855)
chr8 (304-337)||(5626621-5626654)
[»] chr5 (3 HSPs)
chr5 (586-697)||(31722013-31722124)
chr5 (585-697)||(31742506-31742619)
chr5 (597-697)||(24436170-24436270)
[»] chr3 (3 HSPs)
chr3 (47-262)||(27289027-27289245)
chr3 (585-690)||(1652502-1652608)
chr3 (589-683)||(34575019-34575113)
[»] chr7 (3 HSPs)
chr7 (585-675)||(9350077-9350167)
chr7 (585-697)||(38485908-38486020)
chr7 (585-642)||(48058298-48058355)
[»] chr1 (3 HSPs)
chr1 (592-697)||(2987756-2987861)
chr1 (585-697)||(4652130-4652242)
chr1 (585-672)||(11839584-11839672)
[»] chr4 (1 HSPs)
chr4 (585-695)||(19432382-19432493)
[»] chr2 (5 HSPs)
chr2 (585-697)||(31902038-31902150)
chr2 (643-695)||(18681423-18681475)
chr2 (652-697)||(4472285-4472331)
chr2 (585-697)||(6173843-6173956)
chr2 (592-697)||(9926550-9926653)


Alignment Details
Target: chr6 (Bit Score: 619; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 8 - 697
Target Start/End: Complemental strand, 27775626 - 27774937
Alignment:
Q  8 tgtttctcgcgcggcatgtgtgcttagtaacaatattttcatgtaagatggcgagatcctgaatacggcggaccaagataggggtgtctattaagcttac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27775626 tgtttctcgcgcggcatgtgtgcttagtaacaatattttcatgtaagatggcgagatcctgaatacggcggaccaagataggggtgtctattaagcttac 27775527  T
Q  108 aactcctattaccatatcgattagaagctcagagtcactctcaactatgaaatgagtaaaatctttcctatttgtcatttgcattcatgtgtagataccc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27775526 aactcctattaccatatcgattagaagctcagagtcactctcaactatgaaatgagtaaaatctttcctatttgtcatttgcattcatgtgtagataccc 27775427  T
Q  208 catatttcagcatgaagggcatcacaatctccaattctttgagtgtaacctttaaacggctacggtttaagtttcgaaaaagataaccacaacacgcaaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27775426 catatttcagcatgaagggcatcacaatctccaattctttgagtgtaacctttaaacggctacagtttaagtttcgaaaaagataaccacaacacgcaaa 27775327  T
Q  308 tctcattgaatccttgtaagctccatcacaaccaagccttatccactctcttgaaggatacttccaaccaatgtaaatagtttcatgctacctatgcctt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27775326 tctcattgaatccttgtaagctccatcacaaccaagccttatccactctcttgaaggatacttccaaccaatgtaaatagtttcctgctacctatgcctt 27775227  T
Q  408 cccacatctaataatctctcaaaccatctaaagaaaaaatggttgttgtgaatgactaataatcaagtcactaaaacataaaacatattagtttccgact 507  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27775226 cccacatctaataatctctcaaaccatcttaagaaaaaatggctgttgtgaatgactaataatcaagtcactaaaacataaaacatattagtttccgact 27775127  T
Q  508 tcctatcgagatcatgtgttcgcattgaaaatagaacaaaacatattaattgaaatgccttagtacaannnnnnnnnaatcagcaaaattttattaaaaa 607  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||    
T  27775126 tcctatcgagaccatgtgttcgcactgaaaatagaacaaaacatattaattgaaatgccttagtacaatttttttttaatcagcaaaattttattaaaaa 27775027  T
Q  608 ccagatctttgcatgagacaaatatagaccggtgatacaaaaagtacaaactaaggcgtcgtatatagacagaacatccgaaaacaaaca 697  Q
     ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||    
T  27775026 tcagatctttgcatgagacaaacatagaccggtgatacaaaaagtacaaactaaggcgtcgtatatagatggaacatccaaaaacaaaca 27774937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 587 - 697
Target Start/End: Complemental strand, 12794570 - 12794459
Alignment:
Q  587 tcagcaaaattttattaaaaaccagatctttgcatgagacaaatatagaccggtgatacaaaaagtacaaactaa-ggcgtcgtatatagacagaacatc 685  Q
    |||||||||||||||||||||  |||||| ||||| |||  || | |||||| || |  | || ||||||||||| |||| ||||||||||| |||||||    
T  12794570 tcagcaaaattttattaaaaataagatctctgcataagatgaacagagaccgatgttttagaaggtacaaactaaaggcgccgtatatagacggaacatc 12794471  T
Q  686 cgaaaacaaaca 697  Q
    ||||||| ||||    
T  12794470 cgaaaacgaaca 12794459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 2e-42; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 25 - 245
Target Start/End: Original strand, 8209878 - 8210100
Alignment:
Q  25 gtgtgcttagtaacaatattttcatgtaagatggcgagatcctgaatacggcggaccaagataggggtgtctat--taagcttacaactcct-attacca 121  Q
    |||||||||  | ||||||| ||||||||||| |||||||| |||||||||  ||| ||||||||||||| |||  |||| |||||| |||| |||||||    
T  8209878 gtgtgcttaaaagcaatattatcatgtaagatagcgagatcatgaatacggtagactaagataggggtgtgtatgttaagtttacaattccttattacca 8209977  T
Q  122 tatcgattagaagctcagagtcactctcaactatgaaatgagtaaaatctttcctatttgtcatttgcattcatgtgtagataccccatatttcagcatg 221  Q
    ||||||||||||| |  ||||||||||||||||| | |||||||||| ||||| |||||||||||||||||    |||| |||||||| ||||||| |||    
T  8209978 tatcgattagaagtttggagtcactctcaactataagatgagtaaaa-ctttcttatttgtcatttgcatttccatgtacataccccacatttcagtatg 8210076  T
Q  222 aagggcatcacaatctccaattct 245  Q
    |||||| |||||||||||| ||||    
T  8210077 aagggcgtcacaatctccatttct 8210100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 585 - 696
Target Start/End: Original strand, 5214933 - 5215044
Alignment:
Q  585 aatcagcaaaattttattaaaaaccagatctttgcatgagacaaatatagaccggtgatacaaaaagtacaaactaaggcgtcgtatatagacagaacat 684  Q
    ||||||||||||||||||||||| ||||||  ||||| |||| || | |||||| || |||| |||||||||||||||||| ||||||||| |  ||||     
T  5214933 aatcagcaaaattttattaaaaatcagatccctgcataagacgaacagagaccgatgttacagaaagtacaaactaaggcgccgtatataggcgaaacac 5215032  T
Q  685 ccgaaaacaaac 696  Q
    ||||||||||||    
T  5215033 ccgaaaacaaac 5215044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 585 - 697
Target Start/End: Complemental strand, 35062914 - 35062802
Alignment:
Q  585 aatcagcaaaattttattaaaaaccagatctttgcatgagacaaatatagaccggtgatacaaaaagtacaaactaaggcgtcgtatatagacagaacat 684  Q
    ||||||||||||||||||||||| ||| ||| ||||  ||||||| | ||| | ||| |||| ||| |||||| |||  || |||||||||||||||||     
T  35062914 aatcagcaaaattttattaaaaatcaggtctctgcacaagacaaacagagaacagtgttacagaaaatacaaattaatacgccgtatatagacagaacac 35062815  T
Q  685 ccgaaaacaaaca 697  Q
    |||||||||||||    
T  35062814 ccgaaaacaaaca 35062802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 588 - 697
Target Start/End: Original strand, 30235745 - 30235855
Alignment:
Q  588 cagcaaaattttattaaaaaccagatctttgcatgagacaaatatagaccggtgatacaaaaagtacaaactaa-ggcgtcgtatatagacagaacatcc 686  Q
    ||||||| |||||||||||||||  ||| |||   ||||||| | ||||||||| |||| || ||||||||||| |||  ||||||||| | ||||||||    
T  30235745 cagcaaagttttattaaaaaccaagtctctgcgcaagacaaacaaagaccggtgttacagaaggtacaaactaaaggctccgtatataggcggaacatcc 30235844  T
Q  687 gaaaacaaaca 697  Q
    |||||||||||    
T  30235845 gaaaacaaaca 30235855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 5626621 - 5626654
Alignment:
Q  304 caaatctcattgaatccttgtaagctccatcaca 337  Q
    ||||||||||||||||||||||||||||||||||    
T  5626621 caaatctcattgaatccttgtaagctccatcaca 5626654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 586 - 697
Target Start/End: Complemental strand, 31722124 - 31722013
Alignment:
Q  586 atcagcaaaattttattaaaaaccagatctttgcatgagacaaatatagaccggtgatacaaaaagtacaaactaaggcgtcgtatatagacagaacatc 685  Q
    |||||||||||||||||||||| ||| ||||||||  |||| || | |||||| || |||| |||||||||||||||||| ||||||||||| ||||| |    
T  31722124 atcagcaaaattttattaaaaatcaggtctttgcacaagacgaacagagaccgatgttacagaaagtacaaactaaggcgccgtatatagacggaacacc 31722025  T
Q  686 cgaaaacaaaca 697  Q
    ||||||||||||    
T  31722024 cgaaaacaaaca 31722013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 585 - 697
Target Start/End: Complemental strand, 31742619 - 31742506
Alignment:
Q  585 aatcagcaaaattttattaaaaaccagatctttgcatgagacaaatatagaccggtgatacaaaaagtacaaac-taaggcgtcgtatatagacagaaca 683  Q
    ||||||||||||||||||||||||| ||||  ||||  |||| || | ||||||||| ||||| ||||||||||  |||||| ||||||||| | |||||    
T  31742619 aatcagcaaaattttattaaaaacctgatccctgcacaagacgaacagagaccggtgttacaagaagtacaaacaaaaggcgccgtatataggcggaaca 31742520  T
Q  684 tccgaaaacaaaca 697  Q
     |||||||||||||    
T  31742519 cccgaaaacaaaca 31742506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 597 - 697
Target Start/End: Complemental strand, 24436270 - 24436170
Alignment:
Q  597 tttattaaaaaccagatctttgcatgagacaaatatagaccggtgatacaaaaagtacaaactaaggcgtcgtatatagacagaacatccgaaaacaaac 696  Q
    ||||||||||| ||| ||| ||||  |||| |||| ||||||||| ||   ||||||||||||||| |||| ||||||| | ||||||||||||||||||    
T  24436270 tttattaaaaatcaggtctctgcacaagacgaataaagaccggtgttatggaaagtacaaactaagacgtcatatatagtcggaacatccgaaaacaaac 24436171  T
Q  697 a 697  Q
    |    
T  24436170 a 24436170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 47 - 262
Target Start/End: Complemental strand, 27289245 - 27289027
Alignment:
Q  47 catgtaagatggcgagatcctgaatacggcggaccaagataggggtgtcta--ttaagcttacaactccta-ttaccatatcgattagaagctcagagtc 143  Q
    |||||||||| |||||||| || ||| |||| | | |||||||||||| |   |||| |||| |||||||  |||  |||||||||||||  |  |||||    
T  27289245 catgtaagatagcgagatcgtggatatggcgaatcgagataggggtgtgtgcgttaaacttataactccttgttattatatcgattagaaattttgagtc 27289146  T
Q  144 actctcaactatgaaatgagtaaaatctttcctatttgtcatttgcattcatgtgtagataccccatatttcagcatgaagggcatcacaatctccaatt 243  Q
    ||||||||||||||  ||||||||||||| | |||||||||||| |||||  ||||  ||| | || |||||| |||||||| ||||||||||||| |||    
T  27289145 actctcaactatgaggtgagtaaaatcttccatatttgtcatttacattctcgtgtccatatcacacatttcaacatgaaggacatcacaatctcctatt 27289046  T
Q  244 ctttgagtgtaacctttaa 262  Q
     |||| |||||||||||||    
T  27289045 ttttgtgtgtaacctttaa 27289027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 585 - 690
Target Start/End: Original strand, 1652502 - 1652608
Alignment:
Q  585 aatcagcaaaattttattaaaaaccagatctttgcatgagacaaatatagaccggtgatacaaaaagtacaaact-aaggcgtcgtatatagacagaaca 683  Q
    |||||||||||||||||||||||  || ||| ||||  ||||||| | |||||| ||  ||| |||||||||||| |||||||||||||||| | |||||    
T  1652502 aatcagcaaaattttattaaaaattaggtctctgcacaagacaaacagagaccgatgtcacagaaagtacaaactaaaggcgtcgtatataggcggaaca 1652601  T
Q  684 tccgaaa 690  Q
     ||||||    
T  1652602 cccgaaa 1652608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 589 - 683
Target Start/End: Complemental strand, 34575113 - 34575019
Alignment:
Q  589 agcaaaattttattaaaaaccagatctttgcatgagacaaatatagaccggtgatacaaaaagtacaaactaaggcgtcgtatatagacagaaca 683  Q
    ||||||||||| ||||||| | | ||||||||| ||||||| | | | || || ||||||||||||||||||||| ||  ||||||||| |||||    
T  34575113 agcaaaattttgttaaaaatccggtctttgcataagacaaacagaaaacgctgttacaaaaagtacaaactaaggtgttatatatagacggaaca 34575019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 585 - 675
Target Start/End: Complemental strand, 9350167 - 9350077
Alignment:
Q  585 aatcagcaaaattttattaaaaaccagatctttgcatgagacaaatatagaccggtgatacaaaaagtacaaactaaggcgtcgtatatag 675  Q
    ||||||||||||||||||||||||||| ||| ||||  |||| || | ||| ||||| |||||||||||||||| |||||| |||||||||    
T  9350167 aatcagcaaaattttattaaaaaccaggtctctgcacaagacgaacagagatcggtgttacaaaaagtacaaaccaaggcgccgtatatag 9350077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 585 - 697
Target Start/End: Complemental strand, 38486020 - 38485908
Alignment:
Q  585 aatcagcaaaattttattaaaaaccagatctttgcatgagacaaatatagaccggtgatacaaaaagtacaaactaaggcgtcgtatatagacagaacat 684  Q
    ||||||||||||||||||||||| ||| ||| |||   |||| || | |||| |||| |||| |||||| |||||||||||||||| |||| | |||||     
T  38486020 aatcagcaaaattttattaaaaatcaggtctctgctcaagacgaacagagactggtgttacagaaagtataaactaaggcgtcgtaaataggcggaacac 38485921  T
Q  685 ccgaaaacaaaca 697  Q
    |||||||||||||    
T  38485920 ccgaaaacaaaca 38485908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 585 - 642
Target Start/End: Original strand, 48058298 - 48058355
Alignment:
Q  585 aatcagcaaaattttattaaaaaccagatctttgcatgagacaaatatagaccggtga 642  Q
    |||||||||||||||||||||||||| |||| |||   ||||||| | ||||||||||    
T  48058298 aatcagcaaaattttattaaaaaccatatctctgctcaagacaaacagagaccggtga 48058355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 592 - 697
Target Start/End: Original strand, 2987756 - 2987861
Alignment:
Q  592 aaaattttattaaaaaccagatctttgcatgagacaaatatagaccggtgatacaaaaagtacaaactaaggcgtcgtatatagacagaacatccgaaaa 691  Q
    |||||||||||||||| ||| ||| | ||  ||||||||| | |||| |  |||  |||||||||||||||||| ||||||||| | |||||||||||||    
T  2987756 aaaattttattaaaaatcaggtctctacacaagacaaatagataccgatattaccgaaagtacaaactaaggcgccgtatataggcggaacatccgaaaa 2987855  T
Q  692 caaaca 697  Q
    ||||||    
T  2987856 caaaca 2987861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 585 - 697
Target Start/End: Complemental strand, 4652242 - 4652130
Alignment:
Q  585 aatcagcaaaattttattaaaaaccagatctttgcatgagacaaatatagaccggtgatacaaaaagtacaaactaaggcgtcgtatatagacagaacat 684  Q
    ||||||||||||||||||||||||||  | | ||||  |||| || | ||||||||| || | ||||||||||||||| |  ||||||||| | |||||     
T  4652242 aatcagcaaaattttattaaaaaccaagtttctgcacaagacgaagagagaccggtgttatagaaagtacaaactaagacaccgtatataggcggaacac 4652143  T
Q  685 ccgaaaacaaaca 697  Q
    | |||||||||||    
T  4652142 ctgaaaacaaaca 4652130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 585 - 672
Target Start/End: Complemental strand, 11839672 - 11839584
Alignment:
Q  585 aatcagcaaaattttattaaaaaccagatctttgcatgagacaaatatagaccggtgatacaaaaagtacaaact-aaggcgtcgtata 672  Q
    ||||||||||||||||||||||| ||| ||| ||||  |||| || | ||||| ||| |||| |||||||||||| |||||||||||||    
T  11839672 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagacctgtgttacagaaagtacaaactaaaggcgtcgtata 11839584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 585 - 695
Target Start/End: Complemental strand, 19432493 - 19432382
Alignment:
Q  585 aatcagcaaaattttattaaaaaccagatctttgcatgagacaaatatagaccggtgatacaaaaagtacaaac-taaggcgtcgtatatagacagaaca 683  Q
    ||||||||||||||||||||||| ||| ||||||||  ||||  | | | ||| ||| |||| || ||||||||  |||||| ||||||||||| |||||    
T  19432493 aatcagcaaaattttattaaaaaacaggtctttgcacaagacggacagataccagtgttacagaaggtacaaacaaaaggcgccgtatatagacggaaca 19432394  T
Q  684 tccgaaaacaaa 695  Q
    ||||||||||||    
T  19432393 tccgaaaacaaa 19432382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 585 - 697
Target Start/End: Original strand, 31902038 - 31902150
Alignment:
Q  585 aatcagcaaaattttattaaaaaccagatctttgcatgagacaaatatagaccggtgatacaaaaagtacaaactaaggcgtcgtatatagacagaacat 684  Q
    |||||||||||||||||||||||| || ||| |||   |||| || | ||||||||| |||| ||||||||||  || ||| |||||||||  ||||||     
T  31902038 aatcagcaaaattttattaaaaacgaggtctctgcccaagacgaacagagaccggtgttacagaaagtacaaatcaaagcgccgtatataggtagaacac 31902137  T
Q  685 ccgaaaacaaaca 697  Q
    |||||||| ||||    
T  31902138 ccgaaaactaaca 31902150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 643 - 695
Target Start/End: Complemental strand, 18681475 - 18681423
Alignment:
Q  643 tacaaaaagtacaaactaaggcgtcgtatatagacagaacatccgaaaacaaa 695  Q
    |||| |||||||||||||||| ||||||||||| | ||||| |||||||||||    
T  18681475 tacagaaagtacaaactaaggtgtcgtatataggcggaacacccgaaaacaaa 18681423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 652 - 697
Target Start/End: Complemental strand, 4472331 - 4472285
Alignment:
Q  652 tacaaactaa-ggcgtcgtatatagacagaacatccgaaaacaaaca 697  Q
    |||||||||| |||||||||||||||| ||||||||||||| |||||    
T  4472331 tacaaactaaaggcgtcgtatatagacggaacatccgaaaataaaca 4472285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 585 - 697
Target Start/End: Original strand, 6173843 - 6173956
Alignment:
Q  585 aatcagcaaaattttattaaaaaccagatctttgcatgagacaaatatagaccggtgatacaaaaagtacaaact-aaggcgtcgtatatagacagaaca 683  Q
    ||||||||||||||||||||||| ||||||| ||||  |||| ||   ||||| ||| |||  |||||||||||| ||| | ||||||||||   |||||    
T  6173843 aatcagcaaaattttattaaaaatcagatctctgcacaagacgaactgagaccagtgttacggaaagtacaaactaaagacatcgtatataggtggaaca 6173942  T
Q  684 tccgaaaacaaaca 697  Q
     || ||||||||||    
T  6173943 cccaaaaacaaaca 6173956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 592 - 697
Target Start/End: Complemental strand, 9926653 - 9926550
Alignment:
Q  592 aaaattttattaaaaaccagatctttgcatgagacaaatatagaccggtgatacaaaaagtacaaactaaggcgtcgtatatagacagaacatccgaaaa 691  Q
    ||||||||||||||||| || ||| ||||  |||| || | |||| |||| ||||||||||||||| ||||||  ||||||||||| |||||  ||||||    
T  9926653 aaaattttattaaaaactaggtctctgcacaagacgaacagagac-ggtgttacaaaaagtacaaa-taaggctccgtatatagacggaacactcgaaaa 9926556  T
Q  692 caaaca 697  Q
     |||||    
T  9926555 taaaca 9926550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University