View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426-Insertion-4 (Length: 632)
Name: NF4426-Insertion-4
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426-Insertion-4 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 84 - 632
Target Start/End: Complemental strand, 18419920 - 18419365
Alignment:
| Q |
84 |
tgttaaccggtgtttcagaaatacgggttaaagaactaaaatatatcagttttaataaaagagtagtgtaatcattactttattaaaagtaaaagtttat |
183 |
Q |
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| T |
18419920 |
tgttaaccggtgtttcagaaatacggattaaaaaactaaaacatatcagttttaataaaagagtagtgcaatcattactttattaaaagtaaaagtttat |
18419821 |
T |
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| Q |
184 |
atgtctaagacaaaaaattttgtctgagaattttataactga--------gacactagttagcaaaaccctaaaataaaaattcaagaaagaaaagattt |
275 |
Q |
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| T |
18419820 |
atgtctaagacaaaaaattta-tctgagaattttataactgatgttccgagatactggttaacaaaaccctaaaacaaaaattcaaaaaagaaaagattt |
18419722 |
T |
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| Q |
276 |
atttgagttaagtgtcattaaaaccccaccaaaagtttcaattattgtattaactacaacttacagcaccatttaattcagtccttgtgccaactttgta |
375 |
Q |
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| T |
18419721 |
atttgagttaagtgtcattaaaaccccaccaaaagtttcaattattttattaactacaacttacagcaccatttaattcagtccttgtgccaactttgta |
18419622 |
T |
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| Q |
376 |
acggtgtttataaagggtcttaacccttaaaccgtttacacatggatactatagaaagagaatgagatagtgacagagaatgagattccatacagctaaa |
475 |
Q |
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| T |
18419621 |
acggtgtttataaagggtcttaacccttaaaccgtttacacatggatactatagaaagagaatgagatagtgacagagaatgagattccatacagctaaa |
18419522 |
T |
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| Q |
476 |
aagaatagaccaaataatgattggtgttttttcttccttgcatttttacctttcttgcccctcactccaacctaaaaattcttgggaagagaagcacatt |
575 |
Q |
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| T |
18419521 |
aagaatagaccaaataatgattggtgttttttcttccttgcatttttacctttcttgcccctcactccaacctaaaaattcttgggaagagaagcacatt |
18419422 |
T |
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| Q |
576 |
accacaacatggtggaaatgggaaagttccatgcttccatcatgtaataaaaacact |
632 |
Q |
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| T |
18419421 |
accacaacatggtggaaatgggaaagttccatgcttccatcatgtaataaaaacact |
18419365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 18419993 - 18419961
Alignment:
| Q |
8 |
aaaacatgcaactaagtttacctggaaagtaca |
40 |
Q |
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| T |
18419993 |
aaaacatgcaactaagtttacctggaaagtaca |
18419961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 249737 - 249779
Alignment:
| Q |
150 |
tgtaatcattactttattaaaagtaaaagtttatatgtctaag |
192 |
Q |
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| T |
249737 |
tgtaatcattactttattaaaagtaaaagtttatatgtctaag |
249779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 203
Target Start/End: Complemental strand, 19320352 - 19320289
Alignment:
| Q |
140 |
aaaagagtagtgtaatcattactttattaaaagtaaaagtttatatgtctaagacaaaaaattt |
203 |
Q |
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| T |
19320352 |
aaaagagttgtgtaatcgttactttatcaaaagtaacattttatatttgcaagacaaaaaattt |
19320289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 55446756 - 55446822
Alignment:
| Q |
131 |
agttttaataaaagagtagtgtaatcattactttattaaaagtaaaagtttatatgtctaagacaaaa |
198 |
Q |
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| T |
55446756 |
agtttttataaaa-agttgtgtaatcattactttattaaaagtaacatcttatatttccaagacaaaa |
55446822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 33194748 - 33194812
Alignment:
| Q |
133 |
ttttaataaaagagtagtgtaatcattactttattaaaagtaaaagtttatatgtctaagacaaaa |
198 |
Q |
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| T |
33194748 |
ttttaataaaa-agtagtgtaatcattacttaatcaaatgtgatagtttatatttttaagacaaaa |
33194812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 31850819 - 31850771
Alignment:
| Q |
150 |
tgtaatcattactttattaaaagtaaaagtttatatgtctaagacaaaa |
198 |
Q |
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| T |
31850819 |
tgtaatcattattttattaaaagtaacatcttatatttctaagacaaaa |
31850771 |
T |
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