View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4426-Insertion-5 (Length: 481)

Name: NF4426-Insertion-5
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4426-Insertion-5
NF4426-Insertion-5
[»] chr2 (17 HSPs)
chr2 (8-481)||(34176306-34176778)
chr2 (8-235)||(34144185-34144412)
chr2 (12-109)||(34115095-34115192)
chr2 (297-404)||(2248953-2249061)
chr2 (411-481)||(9050126-9050196)
chr2 (411-481)||(16576252-16576322)
chr2 (411-475)||(35370402-35370466)
chr2 (313-400)||(16576215-16576302)
chr2 (334-405)||(16863445-16863515)
chr2 (333-400)||(38576958-38577025)
chr2 (297-392)||(13712948-13713045)
chr2 (411-461)||(16863460-16863510)
chr2 (411-475)||(13712757-13712821)
chr2 (357-405)||(13712766-13712814)
chr2 (417-480)||(38576939-38577002)
chr2 (194-235)||(34115268-34115309)
chr2 (411-475)||(16576421-16576485)
[»] chr7 (10 HSPs)
chr7 (272-398)||(43208671-43208798)
chr7 (273-374)||(32988565-32988667)
chr7 (411-480)||(23944080-23944149)
chr7 (411-475)||(32138893-32138957)
chr7 (427-481)||(34891385-34891439)
chr7 (411-481)||(34891537-34891607)
chr7 (313-390)||(27651540-27651616)
chr7 (356-400)||(7463858-7463902)
chr7 (411-459)||(29152350-29152398)
chr7 (356-400)||(32138907-32138951)
[»] chr5 (10 HSPs)
chr5 (411-481)||(2243317-2243387)
chr5 (421-481)||(39808233-39808293)
chr5 (333-475)||(972816-972952)
chr5 (411-475)||(14138549-14138613)
chr5 (353-392)||(14138552-14138591)
chr5 (349-400)||(41264532-41264583)
chr5 (414-473)||(41264536-41264595)
chr5 (425-475)||(39730313-39730363)
chr5 (353-398)||(2243339-2243384)
chr5 (332-404)||(17736916-17736987)
[»] chr1 (12 HSPs)
chr1 (411-474)||(52432665-52432728)
chr1 (411-481)||(68101-68171)
chr1 (411-475)||(10775167-10775231)
chr1 (411-467)||(46080975-46081031)
chr1 (356-400)||(10775173-10775217)
chr1 (333-400)||(2534437-2534504)
chr1 (413-480)||(3231964-3232031)
chr1 (353-392)||(24873772-24873811)
chr1 (353-392)||(24874605-24874644)
chr1 (339-400)||(52432654-52432715)
chr1 (334-398)||(3231946-3232010)
chr1 (333-404)||(38839678-38839747)
[»] chr8 (9 HSPs)
chr8 (334-404)||(7590332-7590402)
chr8 (412-480)||(12736059-12736127)
chr8 (417-474)||(6630547-6630604)
chr8 (411-475)||(32166642-32166706)
chr8 (411-475)||(35574647-35574711)
chr8 (334-397)||(34695817-34695880)
chr8 (315-404)||(31475009-31475096)
chr8 (421-481)||(37010346-37010406)
chr8 (334-374)||(39280941-39280981)
[»] chr6 (3 HSPs)
chr6 (414-480)||(32047181-32047247)
chr6 (420-480)||(23577164-23577224)
chr6 (411-475)||(32342604-32342668)
[»] chr3 (7 HSPs)
chr3 (411-475)||(39341203-39341267)
chr3 (411-474)||(54437810-54437873)
chr3 (360-400)||(39341213-39341253)
chr3 (353-402)||(54437813-54437862)
chr3 (413-481)||(20519297-20519365)
chr3 (412-480)||(42091793-42091861)
chr3 (423-475)||(54437653-54437705)
[»] chr4 (4 HSPs)
chr4 (333-404)||(20512844-20512915)
chr4 (353-404)||(25062497-25062548)
chr4 (411-469)||(15131588-15131646)
chr4 (427-475)||(20512834-20512882)
[»] scaffold0564 (1 HSPs)
scaffold0564 (271-404)||(5452-5586)
[»] scaffold0047 (1 HSPs)
scaffold0047 (411-480)||(62729-62798)
[»] scaffold1743 (1 HSPs)
scaffold1743 (333-400)||(771-837)


Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 8 - 481
Target Start/End: Original strand, 34176306 - 34176778
Alignment:
Q  8 gttgacatccataagcaaatgaaacccgtagcaaagttcacctataaatgcttctgctcctaaactcgcaaccatggatggaaagtagtcctcaaaatcc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34176306 gttgacatccataagcaaatgaaacccgtagcaaagttcacctataaatgcttctgctcctaaactcgcaaccatggatggaaagtagtcctcaaaatcc 34176405  T
Q  108 aagtcaaaatccaactccatgtggaaacttgtgagtgaaacttcaagtagaagttgctaggaacaatgtgaaagcggatcaattattagcttgtgctaga 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  34176406 aagtcaaaatccaactccatgtggaaacttgtgagtgaaacttcaagtagaagttgctaggaacaatgtgaaaggggattaattattagcttgtgctaga 34176505  T
Q  208 agggtgttgtaagttgtgctttttatatnnnnnnnnttgtgttttctaaattgtgtgaaactaagttttttctacattatcccttgaataattgagggta 307  Q
    ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34176506 agggtgttgtaagttgtgctttttatat-aaaaaaattgtgttttctaaattgtgtgaaactaagttttttctacattatcccttgaataattgagggta 34176604  T
Q  308 atataccctatcagagaacaattatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctttgt 407  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |    
T  34176605 atataccctattagagaacaattatattttcttcatctttatttctacaatcagttaccattttcatcttaagaatatcaaacttcttcatcttcttcat 34176704  T
Q  408 tactcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatc 481  Q
    ||||||||||||||||||| ||| ||| |||||||||| |||| ||||||||||||||||||||||||||||||    
T  34176705 tactcttacaatcagttactattatcaccttaggaacatcaaaattcttcatctccttcatttaacatatgatc 34176778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 34144185 - 34144412
Alignment:
Q  8 gttgacatccataagcaaatgaaacccgtagcaaagttcacctataaatgcttctgctcctaaactcgcaaccatggatggaaagtagtcctcaaaatcc 107  Q
    |||| |||||||||||||||||||||||| | ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34144185 gttggcatccataagcaaatgaaacccgttgtaaagttcacctataaaaccttctgctcctaaactcgcaaccatggatggaaagtagtcctcaaaatcc 34144284  T
Q  108 aagtcaaaatccaactccatgtggaaacttgtgagtgaaacttcaagtagaagttgctaggaacaatgtgaaagcggatcaattattagcttgtgctaga 207  Q
    | || |||||| || |||||||| |||  |||||||||||||| ||||||| |||||||| ||||||| |||||  ||| ||||||||||||||||||||    
T  34144285 atgtaaaaatctaaatccatgtgaaaaggtgtgagtgaaactttaagtagaggttgctagtaacaatgcgaaaggagattaattattagcttgtgctaga 34144384  T
Q  208 agggtgttgtaagttgtgctttttatat 235  Q
    |||||||  |||||||||||||||||||    
T  34144385 agggtgtgttaagttgtgctttttatat 34144412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 34115095 - 34115192
Alignment:
Q  12 acatccataagcaaatgaaacccgtagcaaagttcacctataaatgcttctgctcctaaactcgcaaccatggatggaaagtagtcctcaaaatccaa 109  Q
    ||||||||||||||| |||| || | ||||||||||||||||||  |||||||||||||||  | || ||||||||||||||||||||||||||||||    
T  34115095 acatccataagcaaacgaaatccattgcaaagttcacctataaacccttctgctcctaaacgtgaaatcatggatggaaagtagtcctcaaaatccaa 34115192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 404
Target Start/End: Complemental strand, 2249061 - 2248953
Alignment:
Q  297 aattgagggtaatatacc-ctatcagagaacaattatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttctt 395  Q
    |||||||| |||| |||| |||||| |||| ||| ||||||||||||||||||||  || ||| ||||||||||||||| | || || || |||||||||    
T  2249061 aattgaggataatttacctctatcaaagaaaaatcatattttcttcatctttattcttagaattagttaccattttcatctcaaaaacattaaacttctt 2248962  T
Q  396 catcttctt 404  Q
    |||||||||    
T  2248961 catcttctt 2248953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 411 - 481
Target Start/End: Complemental strand, 9050196 - 9050126
Alignment:
Q  411 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatc 481  Q
    |||||| |||||||||||||||||| | | ||||| ||||||||||||||||| ||||| |||||||||||    
T  9050196 tcttacgatcagttaccattttcatatgaagaacaacaaacttcttcatctccatcattcaacatatgatc 9050126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 411 - 481
Target Start/End: Original strand, 16576252 - 16576322
Alignment:
Q  411 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatc 481  Q
    ||||||||||| ||||||||||| ||| | ||||| ||||||||||||||||||||||| ||||| |||||    
T  16576252 tcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatc 16576322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 411 - 475
Target Start/End: Original strand, 35370402 - 35370466
Alignment:
Q  411 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 475  Q
    |||||||||||||||||||||| |||| | ||| ||||||||||||| ||||||||||| |||||    
T  35370402 tcttacaatcagttaccattttaatctcaagaataccaaacttcttcgtctccttcattcaacat 35370466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 400
Target Start/End: Original strand, 16576215 - 16576302
Alignment:
Q  313 ccctatcagagaacaattatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 400  Q
    |||||||| |||| |||||| ||||||||| |||| ||  |||||||| ||||||||||| | | ||||| |||||||||||||||||    
T  16576215 ccctatcaaagaaaaattatcttttcttcaccttttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatct 16576302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 405
Target Start/End: Original strand, 16863445 - 16863515
Alignment:
Q  334 ttttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttcttt 405  Q
    |||||||| ||||||||  |||||||||||||||||||||| | ||||| |||||| |||||||||||||||    
T  16863445 ttttcttc-tctttattcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttcttt 16863515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 400
Target Start/End: Complemental strand, 38577025 - 38576958
Alignment:
Q  333 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 400  Q
    ||||||||||| ||||||| || ||||||||||||||||||| | ||||| || ||| ||||||||||    
T  38577025 attttcttcatatttatttttataatcagttaccattttcatctaaagaacattaaagttcttcatct 38576958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 392
Target Start/End: Complemental strand, 13713045 - 13712948
Alignment:
Q  297 aattgagggtaatataccctatcagagaacaat--tatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaactt 392  Q
    |||||||| |||| |||||||||| |||| |||  |||||||| || || |||||| |||||||| ||||||||||| || |||| ||| ||||||||    
T  13713045 aattgaggataatttaccctatcaaagaaaaatcatatattttttttatatttattcctacaatcggttaccatttttatcttaaaaatttcaaactt 13712948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 461
Target Start/End: Original strand, 16863460 - 16863510
Alignment:
Q  411 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatct 461  Q
    ||||||||||||||||||||||||||| | ||||| |||| ||||||||||    
T  16863460 tcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatct 16863510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 475
Target Start/End: Complemental strand, 13712821 - 13712757
Alignment:
Q  411 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 475  Q
    |||||| |||||||||||||| ||||||| ||||| |||||||||| |||| ||| ||| |||||    
T  13712821 tcttactatcagttaccatttccatcttaagaacatcaaacttctttatcttctttattcaacat 13712757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 13712814 - 13712766
Alignment:
Q  357 atcagttaccattttcattttaagaatatcaaacttcttcatcttcttt 405  Q
    |||||||||||||| ||| ||||||| |||||||||||| |||||||||    
T  13712814 atcagttaccatttccatcttaagaacatcaaacttctttatcttcttt 13712766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 480
Target Start/End: Complemental strand, 38577002 - 38576939
Alignment:
Q  417 aatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgat 480  Q
    ||||||||||||||||||||| | |||||  ||| ||||||||||| |||||| ||||| ||||    
T  38577002 aatcagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgtgat 38576939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 34115268 - 34115309
Alignment:
Q  194 tagcttgtgctagaagggtgttgtaagttgtgctttttatat 235  Q
    |||||||||||||||||||||  |||||||||||| ||||||    
T  34115268 tagcttgtgctagaagggtgtgttaagttgtgcttcttatat 34115309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 475
Target Start/End: Original strand, 16576421 - 16576485
Alignment:
Q  411 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 475  Q
    ||||||||||| ||| ||||||||| | |  |||| ||||| ||||||| |||||||||||||||    
T  16576421 tcttacaatcatttatcattttcatttcaaaaacaacaaacatcttcatatccttcatttaacat 16576485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 272 - 398
Target Start/End: Original strand, 43208671 - 43208798
Alignment:
Q  272 gttttttctacattatcccttgaataattgagggtaatata-ccctatcagagaacaa-ttatattttcttcatctttatttctacaatcagttaccatt 369  Q
    |||||||||||||||||||||||  ||||||||||||| || |||||||  | || || |||| |||||||||||||||||  |||||||| ||||||||    
T  43208671 gttttttctacattatcccttgatgaattgagggtaatttatccctatcgaataaaaagttat-ttttcttcatctttattcttacaatcaattaccatt 43208769  T
Q  370 ttcattttaagaatatcaaacttcttcat 398  Q
    || ||||||||||||||||| | ||||||    
T  43208770 tttattttaagaatatcaaattccttcat 43208798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 273 - 374
Target Start/End: Complemental strand, 32988667 - 32988565
Alignment:
Q  273 ttttttctacattatcccttgaataattgagggtaatataccc-tatcagagaacaattatattttcttcatctttatttctacaatcagttaccatttt 371  Q
    |||||| |||||||||||| ||  ||||| ||||||| ||| | ||||| |||| ||| ||||||||||||||||||||  ||||||||| || ||||||    
T  32988667 ttttttatacattatccctcgatgaattgggggtaatttacacatatcaaagaaaaatcatattttcttcatctttattcttacaatcagctatcatttt 32988568  T
Q  372 cat 374  Q
    |||    
T  32988567 cat 32988565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 480
Target Start/End: Original strand, 23944080 - 23944149
Alignment:
Q  411 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgat 480  Q
    ||||||||| |||| |||||||||||||| ||||| ||||||||||| |||| |||||| ||||| ||||    
T  23944080 tcttacaattagttgccattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgtgat 23944149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 475
Target Start/End: Complemental strand, 32138957 - 32138893
Alignment:
Q  411 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 475  Q
    ||||| ||||| ||||||||||||||||| ||||| |||| ||||||||||||||| || |||||    
T  32138957 tcttaaaatcaattaccattttcatcttaagaacatcaaaattcttcatctccttcgttcaacat 32138893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 427 - 481
Target Start/End: Original strand, 34891385 - 34891439
Alignment:
Q  427 cattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatc 481  Q
    ||||||||| ||| ||||| |||||||||| |||| ||||||||||||| |||||    
T  34891385 cattttcatattaagaacatcaaacttctttatcttcttcatttaacatgtgatc 34891439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 481
Target Start/End: Original strand, 34891537 - 34891607
Alignment:
Q  411 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatc 481  Q
    |||||| || ||||| |||||| |||| | ||||| |||| |||||||||||||||||| ||||| |||||    
T  34891537 tcttactattagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgatc 34891607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 390
Target Start/End: Complemental strand, 27651616 - 27651540
Alignment:
Q  313 ccctatcagagaacaattatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaac 390  Q
    |||||||| |||| ||||   |||||||||||||||||| |||||| ||| ||||||||||| | ||||| |||||||    
T  27651616 ccctatcaaagaaaaattcatttttcttcatctttatttttacaat-agtaaccattttcatctcaagaacatcaaac 27651540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 400
Target Start/End: Original strand, 7463858 - 7463902
Alignment:
Q  356 aatcagttaccattttcattttaagaatatcaaacttcttcatct 400  Q
    |||| |||| ||||||||||| ||||| |||||||||||||||||    
T  7463858 aatcggttatcattttcatttgaagaacatcaaacttcttcatct 7463902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 459
Target Start/End: Complemental strand, 29152398 - 29152350
Alignment:
Q  411 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcat 459  Q
    |||||||||||||||| |||||||||| |  |||| |||||||||||||    
T  29152398 tcttacaatcagttactattttcatctcaataacatcaaacttcttcat 29152350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 400
Target Start/End: Complemental strand, 32138951 - 32138907
Alignment:
Q  356 aatcagttaccattttcattttaagaatatcaaacttcttcatct 400  Q
    ||||| ||||||||||||| ||||||| |||||| ||||||||||    
T  32138951 aatcaattaccattttcatcttaagaacatcaaaattcttcatct 32138907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 411 - 481
Target Start/End: Complemental strand, 2243387 - 2243317
Alignment:
Q  411 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatc 481  Q
    ||||||||| ||||||||||||||||| | ||||| ||||||||||||| ||||||||| ||||| |||||    
T  2243387 tcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatc 2243317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 481
Target Start/End: Complemental strand, 39808293 - 39808233
Alignment:
Q  421 agttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatc 481  Q
    ||||| |||||||| |||| || || ||||||| |||||||||||||||||||||||||||    
T  39808293 agttatcattttcaccttaagaccatcaaactttttcatctccttcatttaacatatgatc 39808233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 475
Target Start/End: Original strand, 972816 - 972952
Alignment:
Q  333 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctttgttactcttacaatcagttaccatttt 432  Q
    ||||| ||| ||||||||| || ||| ||||| ||||||||| | ||||| |||||||||||||||||      ||| | ||  |||||||| |||||||    
T  972816 atttttttcctctttatttttaaaattagttatcattttcatctcaagaacatcaaacttcttcatct------ttatttttgaaatcagttgccatttt 972909  T
Q  433 catcttaggaacaccaaacttcttcatctccttcatttaacat 475  Q
    ||||  | ||| | |||| ||||||||||| ||||||||||||    
T  972910 catcacaagaaaatcaaatttcttcatctctttcatttaacat 972952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 475
Target Start/End: Original strand, 14138549 - 14138613
Alignment:
Q  411 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 475  Q
    ||||||||||| ||||||||||||||||| ||| | |||||||  ||||||| |||||| |||||    
T  14138549 tcttacaatcaattaccattttcatcttaagaatatcaaactttctcatctctttcattcaacat 14138613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 392
Target Start/End: Original strand, 14138552 - 14138591
Alignment:
Q  353 tacaatcagttaccattttcattttaagaatatcaaactt 392  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  14138552 tacaatcaattaccattttcatcttaagaatatcaaactt 14138591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 400
Target Start/End: Original strand, 41264532 - 41264583
Alignment:
Q  349 tttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 400  Q
    ||||||||||||||||| |||||||| | ||||| |||||| ||||||||||    
T  41264532 tttctacaatcagttacaattttcatatcaagaacatcaaatttcttcatct 41264583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 473
Target Start/End: Original strand, 41264536 - 41264595
Alignment:
Q  414 tacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaac 473  Q
    ||||||||||||| |||||||| | | ||||| |||| ||||||||||| ||||||||||    
T  41264536 tacaatcagttacaattttcatatcaagaacatcaaatttcttcatctctttcatttaac 41264595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 425 - 475
Target Start/End: Complemental strand, 39730363 - 39730313
Alignment:
Q  425 accattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 475  Q
    ||||||||||||| | ||||| ||||||| |||||||| ||||||||||||    
T  39730363 accattttcatctcaagaacatcaaactttttcatctctttcatttaacat 39730313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 398
Target Start/End: Complemental strand, 2243384 - 2243339
Alignment:
Q  353 tacaatcagttaccattttcattttaagaatatcaaacttcttcat 398  Q
    |||||| ||||||||||||||| | ||||| |||||||||||||||    
T  2243384 tacaattagttaccattttcatctcaagaacatcaaacttcttcat 2243339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 404
Target Start/End: Complemental strand, 17736987 - 17736916
Alignment:
Q  332 tattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 404  Q
    |||||| ||||||||||| | |||||||  |||||||||| || |||||||||||||| ||||| | ||||||    
T  17736987 tatttttttcatctttatct-tacaatcgattaccatttttatcttaagaatatcaaatttctttaccttctt 17736916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 474
Target Start/End: Original strand, 52432665 - 52432728
Alignment:
Q  411 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaaca 474  Q
    ||||| ||||| ||||||||||||||| | |||||  |||||||||||||||||||||||||||    
T  52432665 tcttataatcaattaccattttcatctcaagaacattaaacttcttcatctccttcatttaaca 52432728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 411 - 481
Target Start/End: Original strand, 68101 - 68171
Alignment:
Q  411 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatc 481  Q
    ||||||||| |||||||||||| || | | ||||| | ||||||||||||||||||||||||||| |||||    
T  68101 tcttacaatgagttaccatttttatttcaagaacatctaacttcttcatctccttcatttaacatgtgatc 68171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 475
Target Start/End: Original strand, 10775167 - 10775231
Alignment:
Q  411 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 475  Q
    ||||| ||||| ||||||||||||||||| ||||| |||||||||||||||| ||| || |||||    
T  10775167 tcttagaatcaattaccattttcatcttaagaacatcaaacttcttcatctctttcgttcaacat 10775231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 467
Target Start/End: Original strand, 46080975 - 46081031
Alignment:
Q  411 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttca 467  Q
    ||||||||||| ||||||||||||||| | |||||  ||||||||||||||||||||    
T  46080975 tcttacaatcaattaccattttcatctcaagaacattaaacttcttcatctccttca 46081031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 400
Target Start/End: Original strand, 10775173 - 10775217
Alignment:
Q  356 aatcagttaccattttcattttaagaatatcaaacttcttcatct 400  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||    
T  10775173 aatcaattaccattttcatcttaagaacatcaaacttcttcatct 10775217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 400
Target Start/End: Complemental strand, 2534504 - 2534437
Alignment:
Q  333 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 400  Q
    ||||||||||||||||||| || ||| | |||||| |||||| | || || |||||||||||||||||    
T  2534504 attttcttcatctttatttttaaaataatttaccactttcatctcaaaaacatcaaacttcttcatct 2534437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 480
Target Start/End: Original strand, 3231964 - 3232031
Alignment:
Q  413 ttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgat 480  Q
    |||||||||||| | |||||||||| | ||||| ||||||||||||| || |||||| ||||| ||||    
T  3231964 ttacaatcagttgctattttcatctcaagaacaacaaacttcttcatgtcattcattcaacatgtgat 3232031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 392
Target Start/End: Original strand, 24873772 - 24873811
Alignment:
Q  353 tacaatcagttaccattttcattttaagaatatcaaactt 392  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  24873772 tacaatcaattaccattttcattttaagaagatcaaactt 24873811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 392
Target Start/End: Original strand, 24874605 - 24874644
Alignment:
Q  353 tacaatcagttaccattttcattttaagaatatcaaactt 392  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  24874605 tacaatcaattaccattttcattttaagaagatcaaactt 24874644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 400
Target Start/End: Original strand, 52432654 - 52432715
Alignment:
Q  339 ttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 400  Q
    ||||||||||||  || ||||| ||||||||||||| | ||||| || ||||||||||||||    
T  52432654 ttcatctttattcttataatcaattaccattttcatctcaagaacattaaacttcttcatct 52432715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 3231946 - 3232010
Alignment:
Q  334 ttttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcat 398  Q
    |||||||||| ||||| | ||||||||||| | |||||||| | ||||| | |||||||||||||    
T  3231946 ttttcttcatgtttatctttacaatcagttgctattttcatctcaagaacaacaaacttcttcat 3232010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 404
Target Start/End: Complemental strand, 38839747 - 38839678
Alignment:
Q  333 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 404  Q
    ||||| ||||||||||||  |||||| |||||  |||||||| | ||||| ||||||| |||||||||||||    
T  38839747 atttttttcatctttattcttacaattagtta--attttcatctcaagaacatcaaacctcttcatcttctt 38839678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 334 - 404
Target Start/End: Complemental strand, 7590402 - 7590332
Alignment:
Q  334 ttttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 404  Q
    |||||||| ||||||||  ||||||| ||||||| |||||||| ||||| |||||| ||||||||||||||    
T  7590402 ttttcttcgtctttattcttacaatcggttaccaatttcatttcaagaacatcaaatttcttcatcttctt 7590332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 412 - 480
Target Start/End: Original strand, 12736059 - 12736127
Alignment:
Q  412 cttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgat 480  Q
    |||||||| ||||||||||| |||||||  |||| |||||||||||||||||||| || ||||| ||||    
T  12736059 cttacaattagttaccatttccatcttaataacatcaaacttcttcatctccttcgttcaacatgtgat 12736127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 474
Target Start/End: Complemental strand, 6630604 - 6630547
Alignment:
Q  417 aatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaaca 474  Q
    ||||| ||||||||||||||||| || ||  ||| |||||||||||||||||||||||    
T  6630604 aatcaattaccattttcatcttaagatcattaaatttcttcatctccttcatttaaca 6630547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 475
Target Start/End: Complemental strand, 32166706 - 32166642
Alignment:
Q  411 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 475  Q
    |||||| |||| ||| ||||||||||| | ||||| ||||||||||||||||||| ||| |||||    
T  32166706 tcttactatcaattatcattttcatctcaagaacatcaaacttcttcatctcctttattcaacat 32166642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 475
Target Start/End: Complemental strand, 35574711 - 35574647
Alignment:
Q  411 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 475  Q
    ||||||||| |||||| |||||||||||| ||||| |||| || |||||||| |||||| |||||    
T  35574711 tcttacaattagttacgattttcatcttaagaacatcaaattttttcatctcattcattcaacat 35574647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 397
Target Start/End: Original strand, 34695817 - 34695880
Alignment:
Q  334 ttttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttca 397  Q
    |||||||||||||||||  |||||||||||| ||||||| ||| || | ||||||| |||||||    
T  34695817 ttttcttcatctttattcttacaatcagttatcattttcttttcaaaattatcaaatttcttca 34695880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 31475009 - 31475096
Alignment:
Q  315 ctatcagagaacaattatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 404  Q
    |||||| |||| ||| ||||||||||| |||| |||| |  |||||||||| ||||| || | ||||| |||||||||||||||||||||    
T  31475009 ctatcaaagaaaaatcatattttcttcctctt-atttttg-aatcagttactatttttatctcaagaacatcaaacttcttcatcttctt 31475096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 481
Target Start/End: Complemental strand, 37010406 - 37010346
Alignment:
Q  421 agttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatc 481  Q
    ||||||||||||||||| |  |||| ||||||| ||||| || |||||||||||| |||||    
T  37010406 agttaccattttcatctcaaaaacatcaaacttattcatttctttcatttaacatgtgatc 37010346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 374
Target Start/End: Original strand, 39280941 - 39280981
Alignment:
Q  334 ttttcttcatctttatttctacaatcagttaccattttcat 374  Q
    |||||||||||||||||  || |||||||||||||||||||    
T  39280941 ttttcttcatctttattcttaaaatcagttaccattttcat 39280981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 414 - 480
Target Start/End: Original strand, 32047181 - 32047247
Alignment:
Q  414 tacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgat 480  Q
    |||| ||| ||||||||||||||| | ||||| |||||||||||||||| |||||| ||||||||||    
T  32047181 tacattcatttaccattttcatctcaagaacatcaaacttcttcatctcattcattcaacatatgat 32047247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 480
Target Start/End: Original strand, 23577164 - 23577224
Alignment:
Q  420 cagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgat 480  Q
    |||||||||||||||||| |  |||| || |||||| ||||||||||||| ||||| ||||    
T  23577164 cagttaccattttcatctcaaaaacatcatacttctccatctccttcattcaacatctgat 23577224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 475
Target Start/End: Original strand, 32342604 - 32342668
Alignment:
Q  411 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 475  Q
    ||||||||||| ||| ||||||||||| |  |||| ||||||| |||||||| |||||| |||||    
T  32342604 tcttacaatcaattatcattttcatctcaaaaacatcaaactttttcatctcattcattcaacat 32342668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 475
Target Start/End: Original strand, 39341203 - 39341267
Alignment:
Q  411 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 475  Q
    |||||| || ||||||||||||||||||| ||| | ||||||| ||||||||||||||| |||||    
T  39341203 tcttactatgagttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacat 39341267  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 411 - 474
Target Start/End: Original strand, 54437810 - 54437873
Alignment:
Q  411 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaaca 474  Q
    |||||||||||||||||||||| |||| |  |||| ||||||||||||||| | ||||||||||    
T  54437810 tcttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatcttcctcatttaaca 54437873  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 39341213 - 39341253
Alignment:
Q  360 agttaccattttcattttaagaatatcaaacttcttcatct 400  Q
    ||||||||||||||| ||||||||||||||||| |||||||    
T  39341213 agttaccattttcatcttaagaatatcaaactttttcatct 39341253  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 402
Target Start/End: Original strand, 54437813 - 54437862
Alignment:
Q  353 tacaatcagttaccattttcattttaagaatatcaaacttcttcatcttc 402  Q
    ||||||||||||||||||| || | || || |||||||||||||||||||    
T  54437813 tacaatcagttaccattttaatctcaaaaacatcaaacttcttcatcttc 54437862  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 481
Target Start/End: Complemental strand, 20519365 - 20519297
Alignment:
Q  413 ttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatc 481  Q
    |||||||| || ||||||||||||| | ||||  |||| ||||||||||| |||||| ||||| |||||    
T  20519365 ttacaatccgtaaccattttcatctcaagaacgtcaaatttcttcatctctttcattaaacatgtgatc 20519297  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 480
Target Start/End: Complemental strand, 42091861 - 42091793
Alignment:
Q  412 cttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgat 480  Q
    |||||||| | ||| ||||||||||| |  |||| ||||||| |||||||| |||||||||||| ||||    
T  42091861 cttacaattaattatcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgtgat 42091793  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 475
Target Start/End: Original strand, 54437653 - 54437705
Alignment:
Q  423 ttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 475  Q
    ||||||||||||||| |  ||||  |||||||||||| |||||||||||||||    
T  54437653 ttaccattttcatctcaataacattaaacttcttcatatccttcatttaacat 54437705  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 404
Target Start/End: Complemental strand, 20512915 - 20512844
Alignment:
Q  333 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 404  Q
    ||||||||||||||||||| || ||||| ||  ||||||||| |||  || |||||||||||||||||||||    
T  20512915 attttcttcatctttatttttaaaatcaattgtcattttcatcttataaacatcaaacttcttcatcttctt 20512844  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 404
Target Start/End: Original strand, 25062497 - 25062548
Alignment:
Q  353 tacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 404  Q
    |||||||| ||||| ||||||| | |||||||||||||||||||||||||||    
T  25062497 tacaatcaattaccgttttcatctcaagaatatcaaacttcttcatcttctt 25062548  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 469
Target Start/End: Complemental strand, 15131646 - 15131588
Alignment:
Q  411 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatt 469  Q
    |||||| ||||||||||||||| |||| | ||||| |||| ||||||||||||||||||    
T  15131646 tcttactatcagttaccatttttatctcaagaacatcaaatttcttcatctccttcatt 15131588  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 475
Target Start/End: Complemental strand, 20512882 - 20512834
Alignment:
Q  427 cattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 475  Q
    |||||||||||||  |||| ||||||||||||||| |||||||||||||    
T  20512882 cattttcatcttataaacatcaaacttcttcatcttcttcatttaacat 20512834  T

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Target: scaffold0564 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 404
Target Start/End: Complemental strand, 5586 - 5452
Alignment:
Q  271 agttttttctacattatcccttgaataattgagggtaatataccc-tatcagagaacaattatattttcttcatctttatttctacaatcagttaccatt 369  Q
    |||||||||||||||| | ||| |  |||||| |||||| ||||| ||||| | || ||| |  ||||||||||||||||   || |||||| ||| |||    
T  5586 agttttttctacattacctcttaacgaattgaaggtaatttacccatatcaaataaaaataactttttcttcatctttatccttaaaatcaggtacaatt 5487  T
Q  370 ttcattttaagaatatcaaacttcttcatcttctt 404  Q
    ||||| | || || |||||||||||||||||||||    
T  5486 ttcatctcaaaaagatcaaacttcttcatcttctt 5452  T

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Target: scaffold0047 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 411 - 480
Target Start/End: Complemental strand, 62798 - 62729
Alignment:
Q  411 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgat 480  Q
    ||||| ||||||||| || ||||||||||  |||| |||||||||| ||||||||||| ||| |||||||    
T  62798 tcttagaatcagttatcaatttcatcttaaaaacatcaaacttctttatctccttcatataagatatgat 62729  T

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Target: scaffold1743 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 400
Target Start/End: Original strand, 771 - 837
Alignment:
Q  333 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 400  Q
    ||||||||||| ||||||| |||| ||| ||| ||||||| ||| ||| |||||||||||||||||||    
T  771 attttcttcatttttatttttaca-tcatttatcattttcctttcaagtatatcaaacttcttcatct 837  T

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