View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4426_high_10 (Length: 422)

Name: NF4426_high_10
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4426_high_10
NF4426_high_10
[»] chr5 (6 HSPs)
chr5 (225-409)||(896369-896553)
chr5 (87-182)||(896232-896327)
chr5 (224-281)||(4376353-4376410)
chr5 (235-284)||(19417445-19417494)
chr5 (235-284)||(29385394-29385443)
chr5 (224-284)||(9904169-9904229)
[»] chr6 (3 HSPs)
chr6 (123-179)||(16193832-16193888)
chr6 (127-177)||(2543848-2543898)
chr6 (123-161)||(11448186-11448224)
[»] chr3 (2 HSPs)
chr3 (129-179)||(29081702-29081752)
chr3 (129-177)||(11512392-11512440)
[»] chr4 (4 HSPs)
chr4 (235-284)||(31846900-31846949)
chr4 (224-281)||(55382505-55382562)
chr4 (123-159)||(36273080-36273116)
chr4 (224-276)||(41306626-41306678)
[»] chr2 (2 HSPs)
chr2 (129-179)||(7755341-7755391)
chr2 (235-284)||(39819063-39819112)
[»] chr1 (8 HSPs)
chr1 (123-161)||(28739304-28739342)
chr1 (235-284)||(9379818-9379867)
chr1 (120-161)||(50754853-50754894)
chr1 (123-175)||(593824-593876)
chr1 (224-260)||(719089-719125)
chr1 (123-179)||(10449447-10449503)
chr1 (129-177)||(28739418-28739466)
chr1 (224-276)||(44291146-44291198)
[»] scaffold1315 (1 HSPs)
scaffold1315 (127-179)||(1816-1868)
[»] scaffold1293 (1 HSPs)
scaffold1293 (127-179)||(203-255)
[»] scaffold0110 (1 HSPs)
scaffold0110 (123-159)||(26631-26667)
[»] chr7 (2 HSPs)
chr7 (129-177)||(7211865-7211913)
chr7 (129-177)||(17272704-17272752)


Alignment Details
Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 225 - 409
Target Start/End: Original strand, 896369 - 896553
Alignment:
Q  225 tacacttataacattgtggttgaccgatatcaccaatgttaccaaccacaatttcacccatgcgttatctaaataacatctcagtatattagggacccnn 324  Q
    ||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||      
T  896369 tacacttataatattgtggttggccgatatcactaatgttaccaaccacaatttcactcatgcgttatctaaataacatcacagtatattatggacccaa 896468  T
Q  325 nnnnnncatcatacttcgatagcatcatctattggacccacattagaagaaccgcattctgtcaataaagaagaaccacatatat 409  Q
          ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  896469 aaaaaacatcatacttcgatagcatcatctattggacccacattagaagaaccacattctgtcaataaaggagaaccacatatat 896553  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 896232 - 896327
Alignment:
Q  87 caattttcgcttcattttcaccatgtagataacattggataacacttgggtgagattgtggttggtgatattggttaaccacattgtcacaagcgg 182  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||    
T  896232 caattttcgcttcattttccccatgtagataacatcggataacacttgggtgagattgtggttggtgatattgatcaaccacaatgtcacaggcgg 896327  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 4376410 - 4376353
Alignment:
Q  224 gtacacttataacattgtggttgaccgatatcaccaatgttaccaaccacaatttcac 281  Q
    |||||||| | ||||||||||||||| ||  ||| |||||||||||||||||| ||||    
T  4376410 gtacacttgtgacattgtggttgaccaatggcacgaatgttaccaaccacaatgtcac 4376353  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 19417494 - 19417445
Alignment:
Q  235 acattgtggttgaccgatatcaccaatgttaccaaccacaatttcaccca 284  Q
    ||||||| ||||||| || |||||||||| |||||||||||| |||||||    
T  19417494 acattgtagttgaccaatgtcaccaatgtcaccaaccacaatgtcaccca 19417445  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 29385394 - 29385443
Alignment:
Q  235 acattgtggttgaccgatatcaccaatgttaccaaccacaatttcaccca 284  Q
    |||||||||||| || || |||||||||| |||||||||||| |||||||    
T  29385394 acattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcaccca 29385443  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 9904229 - 9904169
Alignment:
Q  224 gtacacttataacattgtggttgaccgatatcaccaatgttaccaaccacaatttcaccca 284  Q
    |||||||| ||||||||||||||| | |||| |||||||| | |||||| ||| |||||||    
T  9904229 gtacacttgtaacattgtggttgatcaatattaccaatgtcaacaaccataatgtcaccca 9904169  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 16193888 - 16193832
Alignment:
Q  123 ggataacacttgggtgagattgtggttggtgatattggttaaccacattgtcacaag 179  Q
    |||||| |||||||||| |||||||||||||| |||||| ||||||| |||||||||    
T  16193888 ggataatacttgggtgacattgtggttggtgacattggtcaaccacaatgtcacaag 16193832  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 2543898 - 2543848
Alignment:
Q  127 aacacttgggtgagattgtggttggtgatattggttaaccacattgtcaca 177  Q
    ||||||||||||| |||||||||||||| |||||  ||||||| |||||||    
T  2543898 aacacttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 2543848  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 11448224 - 11448186
Alignment:
Q  123 ggataacacttgggtgagattgtggttggtgatattggt 161  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  11448224 ggataatacttgggtgacattgtggttggtgatattggt 11448186  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 29081752 - 29081702
Alignment:
Q  129 cacttgggtgagattgtggttggtgatattggttaaccacattgtcacaag 179  Q
    ||||||||||| |||||||||||||| |||||| ||||||| |||||||||    
T  29081752 cacttgggtgatattgtggttggtgacattggtcaaccacaatgtcacaag 29081702  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 11512392 - 11512440
Alignment:
Q  129 cacttgggtgagattgtggttggtgatattggttaaccacattgtcaca 177  Q
    ||||||||||| |||||||||||||| |||||  ||||||| |||||||    
T  11512392 cacttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 11512440  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 31846900 - 31846949
Alignment:
Q  235 acattgtggttgaccgatatcaccaatgttaccaaccacaatttcaccca 284  Q
    |||||||||||| || ||||||||||||| |||||||||||| |||||||    
T  31846900 acattgtggttggccaatatcaccaatgtcaccaaccacaatgtcaccca 31846949  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 55382562 - 55382505
Alignment:
Q  224 gtacacttataacattgtggttgaccgatatcaccaatgttaccaaccacaatttcac 281  Q
    |||||||| ||| ||||||||||||  ||||||||||| |||||||| ||||| ||||    
T  55382562 gtacacttgtaatattgtggttgacaaatatcaccaatattaccaacaacaatgtcac 55382505  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 36273116 - 36273080
Alignment:
Q  123 ggataacacttgggtgagattgtggttggtgatattg 159  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  36273116 ggataacacttgggtgacattgtggtcggtgatattg 36273080  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 276
Target Start/End: Complemental strand, 41306678 - 41306626
Alignment:
Q  224 gtacacttataacattgtggttgaccgatatcaccaatgttaccaaccacaat 276  Q
    |||||||| | ||||| ||||||||| ||||||||||||| || |||||||||    
T  41306678 gtacacttgtgacattatggttgaccaatatcaccaatgtcacaaaccacaat 41306626  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 7755341 - 7755391
Alignment:
Q  129 cacttgggtgagattgtggttggtgatattggttaaccacattgtcacaag 179  Q
    ||||||||||| |||||||||||||| |||||  ||||||| |||||||||    
T  7755341 cacttgggtgacattgtggttggtgacattggccaaccacaatgtcacaag 7755391  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 39819112 - 39819063
Alignment:
Q  235 acattgtggttgaccgatatcaccaatgttaccaaccacaatttcaccca 284  Q
    |||||||||||| || || |||||||||| |||||||||||| |||||||    
T  39819112 acattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcaccca 39819063  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 28739304 - 28739342
Alignment:
Q  123 ggataacacttgggtgagattgtggttggtgatattggt 161  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  28739304 ggataatacttgggtgatattgtggttggtgatattggt 28739342  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 9379867 - 9379818
Alignment:
Q  235 acattgtggttgaccgatatcaccaatgttaccaaccacaatttcaccca 284  Q
    |||||||||||| || ||||||||||||| ||||||||| || |||||||    
T  9379867 acattgtggttggccaatatcaccaatgtcaccaaccacgatatcaccca 9379818  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 50754894 - 50754853
Alignment:
Q  120 attggataacacttgggtgagattgtggttggtgatattggt 161  Q
    ||||||||| |||||||||| |||||||||||||| ||||||    
T  50754894 attggataatacttgggtgacattgtggttggtgacattggt 50754853  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 593876 - 593824
Alignment:
Q  123 ggataacacttgggtgagattgtggttggtgatattggttaaccacattgtca 175  Q
    |||||| |||||||||| ||| | |||||| |||||||||||||||| |||||    
T  593876 ggataatacttgggtgacattatagttggtaatattggttaaccacaatgtca 593824  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 719089 - 719125
Alignment:
Q  224 gtacacttataacattgtggttgaccgatatcaccaa 260  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  719089 gtacacttataacattgtgattgaccaatatcaccaa 719125  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 10449447 - 10449503
Alignment:
Q  123 ggataacacttgggtgagattgtggttggtgatattggttaaccacattgtcacaag 179  Q
    |||||| |||||||||| |||||||||||||| ||||   ||||||| |||||||||    
T  10449447 ggataatacttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaag 10449503  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 28739466 - 28739418
Alignment:
Q  129 cacttgggtgagattgtggttggtgatattggttaaccacattgtcaca 177  Q
    ||||||||||| |||||||||||||| |||||  ||||||| |||||||    
T  28739466 cacttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 28739418  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 44291146 - 44291198
Alignment:
Q  224 gtacacttataacattgtggttgaccgatatcaccaatgttaccaaccacaat 276  Q
    |||||||| | ||||||||||||||| || |||||||| | ||||||||||||    
T  44291146 gtacacttgtgacattgtggttgaccaatgtcaccaatataaccaaccacaat 44291198  T

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Target: scaffold1315 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 1816 - 1868
Alignment:
Q  127 aacacttgggtgagattgtggttggtgatattggttaaccacattgtcacaag 179  Q
    ||||||||||||| |||||||||||||| |||| | ||||||| | |||||||    
T  1816 aacacttgggtgacattgtggttggtgacattgatcaaccacaatatcacaag 1868  T

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Target: scaffold1293 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 255 - 203
Alignment:
Q  127 aacacttgggtgagattgtggttggtgatattggttaaccacattgtcacaag 179  Q
    ||||||||||||| |||||||||||||| |||| | ||||||| | |||||||    
T  255 aacacttgggtgacattgtggttggtgacattgatcaaccacaatatcacaag 203  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 26667 - 26631
Alignment:
Q  123 ggataacacttgggtgagattgtggttggtgatattg 159  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  26667 ggataacacttggatgacattgtggttggtgatattg 26631  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 7211865 - 7211913
Alignment:
Q  129 cacttgggtgagattgtggttggtgatattggttaaccacattgtcaca 177  Q
    ||||||||||| |||||||||||||| |||||  ||||||| |||||||    
T  7211865 cacttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 7211913  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 17272704 - 17272752
Alignment:
Q  129 cacttgggtgagattgtggttggtgatattggttaaccacattgtcaca 177  Q
    ||||||||||| |||||||||||||| |||||  ||||||| |||||||    
T  17272704 cacttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 17272752  T

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