View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_high_13 (Length: 389)
Name: NF4426_high_13
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 372
Target Start/End: Original strand, 12121355 - 12121717
Alignment:
| Q |
9 |
acatcatcaaaaactactaaatcatcacacatcaaaggtaaaatacataacagctactaacaagtatagatccaaactaaaataaccacatttaggca-- |
106 |
Q |
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| T |
12121355 |
acatcaacaaaaactactaaatcatcacacatcaaaggtaaaatagataacagctactaacaagtatagatccaaagtaa-----ccacgtttaaccaaa |
12121449 |
T |
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| Q |
107 |
--tactttctagtaaatccaaattgaaatcaaagcatcatttgaaactctgtaaacagtctcaaaagaccttacaaagtagtcgtcttattagtcaaaga |
204 |
Q |
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| T |
12121450 |
catactttctagtaa-tccaaattgaaattaaaacatcctttgaaactctgtaaacagtca-aaaagaccttacaaagtagtcatcttattagtcaaaga |
12121547 |
T |
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| Q |
205 |
acaagaaaaataaagctttgtttaactcatcagcatcaaatttgagctaactgcaacataaaccaaatctatttatctatccatctatctgcttaaag-- |
302 |
Q |
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| T |
12121548 |
acatgaaaaataaagctttgtttaactcatcagcatcaaatttgagctaattgcaacattaaccatatctatttatctatccatctatctgcttaaagaa |
12121647 |
T |
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| Q |
303 |
aaatcttccgctaatatacatcgcggaactttacacttacatttcctgtcatttgttccctacatcagtg |
372 |
Q |
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| T |
12121648 |
aaatcttccgctaatatacatcgcggaattttacacttacatttcctgtcatttgttccctacatcagtg |
12121717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 128 - 285
Target Start/End: Complemental strand, 14670180 - 14670021
Alignment:
| Q |
128 |
tgaaatcaaagcatcatttgaaactctgtaaa-cagtctcaaaagaccttacaaagt-agtcgtcttattagtcaaagaacaagaaaaataaagctttgt |
225 |
Q |
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| T |
14670180 |
tgaaattaaagcatcatttgaaacaatgcaaaacagtgtcgaaagaccttataaaatcaatcaacttataagtcaaataacatgaaaaataaagctttgt |
14670081 |
T |
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| Q |
226 |
ttaactcatcagcatcaaatttgagctaactgcaacataaaccaaatctatttatctatc |
285 |
Q |
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| T |
14670080 |
ttaagtcaacaaaatcaaacttgagctgattgcaacatataccgaatatatctatctatc |
14670021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 261
Target Start/End: Original strand, 14643107 - 14643252
Alignment:
| Q |
119 |
aatccaaa-ttgaaatcaaagcatcatttgaaactctgtaaa-cagtctcaaaagaccttacaaagt-agtcgtcttattagtcaaagaacaagaaaaat |
215 |
Q |
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| T |
14643107 |
aatccaaacttgaaattaaagcatcatttgaaacaatgcaaaacagtgtcgaaagaccttacaaaatcagtcaacttataagtcaaataacatgaaaaat |
14643206 |
T |
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| Q |
216 |
aaagctttgtttaactcatcagcatcaaatttgagctaactgcaac |
261 |
Q |
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| T |
14643207 |
aaagcttcgttcaagtcaacaaaatcaaacttgagctgattgcaac |
14643252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 14691093 - 14691146
Alignment:
| Q |
124 |
aaattgaaatcaaagcatcatttgaaactctgtaaacagtctcaaaagacctta |
177 |
Q |
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| T |
14691093 |
aaattgaaattaaagcatcatctgaaactctgtaaaacttttcaaaagacctta |
14691146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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