View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4426_high_14 (Length: 385)

Name: NF4426_high_14
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4426_high_14
NF4426_high_14
[»] chr1 (1 HSPs)
chr1 (12-385)||(37465469-37465842)


Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 12 - 385
Target Start/End: Original strand, 37465469 - 37465842
Alignment:
Q  12 ataggacatgacaaagtttagggcagcaatagggaggagtctattgataatataatcagaggtcaagaatgcctgatcccaaaacaaaggcaaaacagca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37465469 ataggacatgacaaagtttagggcagcaatagggaggagtctattgataatataatcagaggtcaagaatgcctgatcccaaaacaaaggcaaaacagca 37465568  T
Q  112 cgatttaaaagtgttatatcaagttcaacaatatgtctatgcttgaactcaactccatttagatggtgagtatgtcgatgtaagagttcggagagaaaga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37465569 cgatttaaaagtgttatatcaagttcaacaatatgtctatgcttgaactcaactccatttagatggtgagtatgtcgatgtaagagttcggagagaaaga 37465668  T
Q  212 caaaaggagaagtttgtgaaaatgtgtaagaattataatgcatcgtatataatatagtgaaccaacaaaactaaccaactatccggacagaaaactacga 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37465669 caaaaggagaagtttgtgaaaatgtgtaagaattataatgcatcgtatataatatagtgaaccaacaaaactaaccaactatccggacagaaaactacga 37465768  T
Q  312 taacatagattctactattctcattggataagaaacaaatttaaaggaaaatcatcctcgaacaagattgcatc 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37465769 taacatagattctactattctcattggataagaaacaaatttaaaggaaaatcatcctcgaacaagattgcatc 37465842  T

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