View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_high_17 (Length: 353)
Name: NF4426_high_17
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 35499934 - 35500269
Alignment:
| Q |
1 |
atcagaaaataaaccttaggaagtaaaaatagtcgaactacactgctatactggattttgaaatcattagcctgtccttgaagccgcaagaatgacaggt |
100 |
Q |
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| T |
35499934 |
atcagaaaataaaccttaggaagtaaaaatagtcgaactacactgctatactggattttgaaatcattagcctgtccttgaagccgcaagaatgacaggt |
35500033 |
T |
|
| Q |
101 |
gtaactcgacactatatcttcccctgcagagtaacacaaatttctatcattagatatttgatctttctcttgaaaggttgtaaacggaatcagaagtatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35500034 |
gtaactcgacactatatcttcccctgcagagtaacacaaatttctatcattagatatttgatctttctcttgaaaggttgtaaacggaatcagaagtatg |
35500133 |
T |
|
| Q |
201 |
caaagcagtgataagaaacagaaactagttaaatgaacgtgtctgtgtatttaaaaggttaccttggtgtaaggattgcaacaccatcaaaggtaacaac |
300 |
Q |
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| T |
35500134 |
caaagcagtgataagaaacagaaactagtt-aatgaacatgtctgtgtatttaaaaggttaccttggtgtaaggattgcaataccatcaaaggtaacaac |
35500232 |
T |
|
| Q |
301 |
agcatcttcacctccagcaccaacgtcggccacagat |
337 |
Q |
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| T |
35500233 |
agcatcttcacctccagcaccaacgtcggccacagat |
35500269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 9 - 146
Target Start/End: Complemental strand, 7071680 - 7071543
Alignment:
| Q |
9 |
ataaaccttaggaagtaaaaatagtcgaactacactgctatactggattttgaaatcattagcctgtccttgaagccgcaagaatgacaggtgtaactcg |
108 |
Q |
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|||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||| || |
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| T |
7071680 |
ataaaccttaggaagtaaaaataggcgaaccacactgctgtactggattttgaaatcgttagcctgtccctgaagccgcaaaaatgacaagtgtaattca |
7071581 |
T |
|
| Q |
109 |
acactatatcttcccctgcagagtaacacaaatttcta |
146 |
Q |
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| T |
7071580 |
acactgtatcgtcctctgcacaataaagcaaatttcta |
7071543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 7071444 - 7071379
Alignment:
| Q |
259 |
ttaccttggtgtaaggattgcaacaccatcaaaggtaacaacagcatcttcacctccagcaccaac |
324 |
Q |
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||||||||||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||||||| |
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| T |
7071444 |
ttaccttggtgtaaggattgcaataccctcaaatgtaacaacagcatcttctcctccagcaccaac |
7071379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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