View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4426_high_23 (Length: 315)
Name: NF4426_high_23
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_high_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 9102238 - 9102042
Alignment:
| Q |
17 |
aaaatcaactaataaacacttaattaaaatacattctgtaattaaaatgcaaattagcgctgtaatcaactaataaaccctagtttatcccgatttaagc |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9102238 |
aaaatcaactaataaacacttaagtaaaatacattctgtaattaaaatgcaaattagcgctgtaatcaactaataaaccctagtttatcccgatttaagc |
9102139 |
T |
|
| Q |
117 |
atgtatttctgtgagaagtgcaataaacatgaggaaaagttttctcgaggtatattttcattcacattgaattcatcttcatcaatggttgttcaac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9102138 |
atgtatttctgtgagaagtgcaataaacatgaggaaaagttttcccgaggtatattttcattcacattgtattcatcttcatcaatggttgttcaac |
9102042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 212 - 304
Target Start/End: Complemental strand, 9101585 - 9101493
Alignment:
| Q |
212 |
acctatttcatttatactggtctttcattttaatttaactgtcagatgcattctcaattactacggaattgtttgatatcttgatgtatctct |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9101585 |
acctatttcatttatactggtctttcattttaatttaactgtcagatgcattctcaattactacggaattgtttgatatcttgatgtatctct |
9101493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University