View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_high_29 (Length: 297)
Name: NF4426_high_29
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 42639218 - 42639381
Alignment:
| Q |
1 |
ctgaaagagcattgaacatgcctggacaacaaaaacaaaccaatccaataaggatgatttgtgaaagaggcgaattgtatcggacaagtgatgaagtttt |
100 |
Q |
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| T |
42639218 |
ctgaaagagcattgaacatgcctggacaacaaaaacaaaccaatccaataaggatgatttgtgaaagaggcgaattgtatcggacaagtgatgaagtttt |
42639317 |
T |
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| Q |
101 |
tgtggtttccggtggttgagtggctgattcttcatattcaacgacaccacccattgggaaattg |
164 |
Q |
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| T |
42639318 |
tgtggttttcggtggttgagtggctgattcttcatattcaacgacaccacccattgggaaattg |
42639381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 42632074 - 42632216
Alignment:
| Q |
1 |
ctgaaagagcattgaacatgcctggacaacaaaaacaaaccaatccaataaggatgatttgtgaaagaggcgaattgtatcggacaa---gtgatgaagt |
97 |
Q |
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| T |
42632074 |
ctgaaagagcgttgaacatgcctggacaacaaaaacaaactaagccaataaggattatttgtgaaagaggtgaattgtatctgaaaaggtgtgatgaagt |
42632173 |
T |
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| Q |
98 |
ttttgtggtttccggtggttgagtggctgattcttcatattca |
140 |
Q |
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| T |
42632174 |
ttttgttgtttctggtgtttgagttcctgattctacattttca |
42632216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 42639447 - 42639499
Alignment:
| Q |
230 |
caacaatttatggagttggagattgagatttgaccaccataatgtggaaaagt |
282 |
Q |
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| T |
42639447 |
caacaatttatggagttggagattgagatttgaccaccataatgtggaaaagt |
42639499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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