View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_high_30 (Length: 295)
Name: NF4426_high_30
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 31870144 - 31870422
Alignment:
| Q |
1 |
aggtttgtggattaatctcagcctgtgtaggaggacccatcctcttcttcataatctcattaccccatttcaacctatcaacagtaacatccccacacca |
100 |
Q |
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| T |
31870144 |
aggtttgtggattaatctcagcctgtgtaggaggacccatcttcttcttcataatctcattaccccatttcaacctatcaacagtaacatccccacacca |
31870243 |
T |
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| Q |
101 |
caaaatccctttaaccaattgaccagaaccggccgcgatcagcttcgccgcggttccactataatcctccacattaggagccaatgtagtccaataagca |
200 |
Q |
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| T |
31870244 |
caaaatccctttaaccaattgaccagaaccggccgcgatcagcttcgccgcggttccactataatcctccacattaggagccaatgtagtccaataggca |
31870343 |
T |
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| Q |
201 |
gcacatctctcctccatcaattccttcttctccttcacattatccaaatccgccggcgatatctccatcgccaatgaac |
279 |
Q |
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| T |
31870344 |
gcacatctctcctccatcaattccttcttctccttcacattatccaaatccgcgggcgatatctccatcgccaatgaac |
31870422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 236
Target Start/End: Complemental strand, 8851693 - 8851494
Alignment:
| Q |
37 |
ccatcctcttcttcataatctcattaccccatttcaacctatcaacagtaacatccccacaccacaaaatccctttaaccaattgaccagaaccggccgc |
136 |
Q |
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| T |
8851693 |
ccatccttttcttcataacctgattcccccattgcaacctatccatagtaacatcaccacaccacaaaatccccttgatcacatgtccagaccccgaagc |
8851594 |
T |
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| Q |
137 |
gatcagcttcgccgcggttccactataatcctccacattaggagccaatgtagtccaataagcagcacatctctcctccatcaattccttcttctccttc |
236 |
Q |
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| T |
8851593 |
tatcatcctcgcagcagtcccactatactcctccacattcggtgccaatgtagtccaatacgccgcacattgcccctccatcatctccttcttcttcttc |
8851494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 27878304 - 27878369
Alignment:
| Q |
41 |
cctcttcttcataatctcattaccccatttcaacctatcaacagtaacatccccacaccacaaaat |
106 |
Q |
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| T |
27878304 |
cctcttcttcatgaaatcatcaccccatttcaatctatcaacagtaacatcaccgcaccacaaaat |
27878369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 27878417 - 27878466
Alignment:
| Q |
154 |
ttccactataatcctccacattaggagccaatgtagtccaataagcagca |
203 |
Q |
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| T |
27878417 |
ttccactataatcctccacgtttggtgccaacgttgtccaataagcagca |
27878466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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