View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_high_35 (Length: 266)
Name: NF4426_high_35
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 29551580 - 29551353
Alignment:
| Q |
18 |
acttgtagtggcgaaccatggcatccacagatagaggaagcaagcaataagcagctagtagcaatatgattctaatacacatcatccccataatcacttc |
117 |
Q |
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| T |
29551580 |
acttgtagtggcgaaccatggcatccacagatagaggaagcaagcaataagcagctagtagaaatatgattctaatacacataatccccataatcactta |
29551481 |
T |
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| Q |
118 |
tttgaattgtctctgcctccacacaaacacagaagctctatatatacctagcttttccttttctagctagctatactttgtgtggagctcactatgcaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
29551480 |
tttgaattgtctctgcctccacacaaacacagaagctctatatatacctagctttcccttttgtagctagctatactttgtgtggagctcactat----- |
29551386 |
T |
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| Q |
218 |
gcaaattgaggagaatggaacaaccttatatat |
250 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
29551385 |
gcaaattgaggagaatggaacaaccttatatat |
29551353 |
T |
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