View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4426_high_36 (Length: 262)

Name: NF4426_high_36
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4426_high_36
NF4426_high_36
[»] chr1 (2 HSPs)
chr1 (12-243)||(30670242-30670481)
chr1 (85-177)||(25652313-25652404)
[»] chr8 (1 HSPs)
chr8 (83-179)||(11137252-11137347)
[»] chr6 (1 HSPs)
chr6 (85-161)||(11660831-11660906)
[»] chr5 (2 HSPs)
chr5 (82-179)||(316988-317087)
chr5 (90-179)||(10054662-10054750)
[»] chr4 (1 HSPs)
chr4 (83-178)||(41961624-41961718)
[»] chr3 (2 HSPs)
chr3 (58-143)||(50432527-50432612)
chr3 (83-143)||(5270598-5270657)
[»] chr7 (1 HSPs)
chr7 (83-143)||(1360056-1360115)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 243
Target Start/End: Original strand, 30670242 - 30670481
Alignment:
Q  12 tgagatgaactaggtaaacaaatcatggtataatttttcctccacactctttatcttgttgtcttgctataattgtggttttgctttacacttagtttgc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30670242 tgagatgaactaggtaaacaaatcatggtataatttttcctccactctctttatcttgttgtcttgctataattgtggttttgctttacacttggtttgc 30670341  T
Q  112 tagattagacctatatctgtttttgttgcttgaggtggttttgattattggttgttattgatacttgttcc--------aagcttatttgtttgatttga 203  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  30670342 tagattaaacctatatctgtttttgttgcttgaggtggttttgattattggttgttattgatacttgttccacacctgtaagcttatttgtttgatttga 30670441  T
Q  204 atccaaattcacaataaacacatataaacatgatcagaat 243  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30670442 atccaaattcacaataaacacatataaacatgatcagaat 30670481  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 25652313 - 25652404
Alignment:
Q  85 tgtggttttgctttacacttagtttgctagattagacctatatctgtttttgttgcttgaggtggttttgattattggttgttattgatactt 177  Q
    |||||||||||||||||||||| ||||||||||||| ||| || |||| ||||| |||| | |  ||||||||| || |||  ||||||||||    
T  25652313 tgtggttttgctttacacttag-ttgctagattagatctaaatttgttgttgttacttgtgattattttgattaatgattgcaattgatactt 25652404  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 179
Target Start/End: Original strand, 11137252 - 11137347
Alignment:
Q  83 attgtggttttgctttacacttagtttgctagattagacctatatctgtttttgttgcttgaggtggttttgattattggttgttattgatacttgt 179  Q
    ||||||||||| ||||| |||| | |||||||||||||  || || |||| |||||||||| |||  |||||||||| |||||| ||||||||||||    
T  11137252 attgtggtttttctttatactt-gattgctagattagatttagatatgttattgttgcttgtggttattttgattatcggttgtcattgatacttgt 11137347  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 11660831 - 11660906
Alignment:
Q  85 tgtggttttgctttacacttagtttgctagattagacctatatctgtttttgttgcttgaggtggttttgattattg 161  Q
    |||||||||||||||||||| ||| ||||||||||| ||| ||||||| |||||||||| |   |||||||||||||    
T  11660831 tgtggttttgctttacacttggtt-gctagattagatctagatctgttgttgttgcttgcgaatgttttgattattg 11660906  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 316988 - 317087
Alignment:
Q  82 aattgtggttttgctttacacttagtttgctagattagacctatatct---gtttttgttgcttgaggtggttttgattattggttgttattgatacttg 178  Q
    ||||||||||||||||||||||| | ||||||||| ||| ||| ||||   ||| |||||||||| |||  ||||| ||||||||||| | |||||||||    
T  316988 aattgtggttttgctttacactt-ggttgctagataagatctagatctgtcgttgttgttgcttgtggttattttggttattggttgtcactgatacttg 317086  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 10054750 - 10054662
Alignment:
Q  90 ttttgctttacacttagtttgctagattagacctatatctgtttttgttgcttgaggtggttttgattattggttgttattgatacttgt 179  Q
    ||||||||||||||| ||| ||||||||||| ||| || ||||  |||||| || |||  ||||||||||| ||||| ||||||||||||    
T  10054750 ttttgctttacacttggtt-gctagattagatctagatttgttgatgttgcatgtggttattttgattattagttgtcattgatacttgt 10054662  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 178
Target Start/End: Original strand, 41961624 - 41961718
Alignment:
Q  83 attgtggttttgctttacacttagtttgctagattagacctatatctgtttttgttgcttgaggtggttttgattattggttgttattgatacttg 178  Q
    ||||||||||||||||| || | |||  |||||||||| ||| |||| || ||||||||||  ||  ||||| ||||||||||| |||||||||||    
T  41961624 attgtggttttgctttaaacctggtta-ctagattagatctagatctattgttgttgcttgtagtttttttggttattggttgtcattgatacttg 41961718  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 50432612 - 50432527
Alignment:
Q  58 ctctttatcttgttgtc-ttgctataattgtggttttgctttacacttagtttgctagattagacctatatctgtttttgttgcttg 143  Q
    ||||||||||||||||| ||| | | |||||||||||||||| ||||| | |||||||||| || ||| |||| || ||||||||||    
T  50432612 ctctttatcttgttgtctttggtttgattgtggttttgctttccacttcg-ttgctagattggatctagatctattattgttgcttg 50432527  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 5270598 - 5270657
Alignment:
Q  83 attgtggttttgctttacacttagtttgctagattagacctatatctgtttttgttgcttg 143  Q
    ||||||||||||| |||||||| ||| ||||||||||| ||| |||| || ||||||||||    
T  5270598 attgtggttttgcattacacttggtt-gctagattagatctagatctattgttgttgcttg 5270657  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 1360115 - 1360056
Alignment:
Q  83 attgtggttttgctttacacttagtttgctagattagacctatatctgtttttgttgcttg 143  Q
    |||||||||||||||||||||||||||  ||||||||| ||| |  |||| ||||||||||    
T  1360115 attgtggttttgctttacacttagttt-ttagattagatctaaaattgttgttgttgcttg 1360056  T

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