View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_high_40 (Length: 251)
Name: NF4426_high_40
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 2751797 - 2752023
Alignment:
| Q |
18 |
tagtatgttattataatttggctgtagaacctttcattcaaaaccttgtaatcacaacctatacacggactccattcagacgtcattttgaagtttctgt |
117 |
Q |
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| T |
2751797 |
tagtatgttattataatatggctgtagaacctttcattcaaaaccttgtaatcacaacctatacacggactccattcagacgtcattttgaagtttctgt |
2751896 |
T |
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| Q |
118 |
ccatgtaataatcaaaatatcctcatttgaatgaatatttttattctgctaaccaagattaattctgctttcattatatttaagttgattcaaagttaat |
217 |
Q |
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| T |
2751897 |
ccatgtaataatcaaaatatcctcatttgaatgaatatttttattttgctaaccaagattaattctgctttcat--tatttaagttgattcaaagttaat |
2751994 |
T |
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| Q |
218 |
caagaggacatgtatgtgacttagccaac |
246 |
Q |
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| T |
2751995 |
caagaggacatgtatgtgacttagccaac |
2752023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 2800434 - 2800491
Alignment:
| Q |
48 |
ctttcattcaaaaccttgtaatcacaacctatacacggactccattcagacgtcattt |
105 |
Q |
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|||| ||||||||||||||||||| ||||||| ||||||||||||||| |||||| |
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| T |
2800434 |
ctttgattcaaaaccttgtaatcaagacctatatttggactccattcagacatcattt |
2800491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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