View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4426_high_43 (Length: 248)

Name: NF4426_high_43
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4426_high_43
NF4426_high_43
[»] chr4 (29 HSPs)
chr4 (11-239)||(6813883-6814111)
chr4 (16-239)||(6794553-6794776)
chr4 (11-239)||(6589667-6589895)
chr4 (11-239)||(6726039-6726267)
chr4 (11-235)||(6649168-6649392)
chr4 (13-236)||(6624061-6624284)
chr4 (11-236)||(6535282-6535507)
chr4 (11-236)||(6750959-6751184)
chr4 (11-228)||(6756585-6756802)
chr4 (43-235)||(6547565-6547757)
chr4 (11-242)||(6499978-6500209)
chr4 (22-236)||(6713923-6714137)
chr4 (46-213)||(8412955-8413122)
chr4 (21-242)||(6672761-6672983)
chr4 (70-235)||(4925774-4925940)
chr4 (11-236)||(6834286-6834505)
chr4 (66-239)||(4322800-4322973)
chr4 (45-121)||(4333801-4333877)
chr4 (45-236)||(4358544-4358735)
chr4 (43-230)||(25568132-25568319)
chr4 (68-121)||(4343191-4343244)
chr4 (45-121)||(4351478-4351554)
chr4 (66-121)||(4126135-4126190)
chr4 (175-234)||(4925710-4925769)
chr4 (69-119)||(4135482-4135532)
chr4 (175-242)||(4343070-4343137)
chr4 (175-242)||(6832365-6832432)
chr4 (71-105)||(7890541-7890575)
chr4 (175-239)||(6811850-6811914)
[»] scaffold0373 (1 HSPs)
scaffold0373 (16-239)||(11527-11750)
[»] chr7 (7 HSPs)
chr7 (66-230)||(36215590-36215754)
chr7 (44-134)||(34727413-34727503)
chr7 (44-105)||(34730571-34730632)
chr7 (62-134)||(18929223-18929295)
chr7 (43-117)||(34721095-34721169)
chr7 (44-105)||(34735170-34735231)
chr7 (43-105)||(18924337-18924399)
[»] chr6 (17 HSPs)
chr6 (43-230)||(5148634-5148821)
chr6 (43-121)||(5075406-5075484)
chr6 (45-122)||(5381897-5381974)
chr6 (45-116)||(5104549-5104620)
chr6 (58-121)||(5341943-5342006)
chr6 (175-230)||(5423893-5423948)
chr6 (66-116)||(5068772-5068822)
chr6 (178-236)||(5068884-5068942)
chr6 (43-117)||(5183627-5183701)
chr6 (58-116)||(5356306-5356364)
chr6 (66-116)||(5368714-5368764)
chr6 (43-121)||(5395292-5395370)
chr6 (164-230)||(5431547-5431613)
chr6 (44-121)||(5175115-5175192)
chr6 (43-116)||(5424007-5424080)
chr6 (184-236)||(5094175-5094227)
chr6 (66-118)||(5431659-5431711)
[»] scaffold0294 (2 HSPs)
scaffold0294 (66-116)||(10366-10416)
scaffold0294 (175-236)||(10475-10536)
[»] chr3 (1 HSPs)
chr3 (76-121)||(6907450-6907495)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 6814111 - 6813883
Alignment:
Q  11 cagaataagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttc 110  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6814111 cagaataagaaatcacatctgttaaatgtttagcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttc 6814012  T
Q  111 atccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccat 210  Q
    ||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  6814011 atccatttcttctattgcatacacttgataaatttcatacaatctgagaagacgcatatttctagttgtgattattattctactgcccagaccaaaccat 6813912  T
Q  211 tcacggcttccacacaaagcctttagctg 239  Q
    ||  |||||||||||||||||||||||||    
T  6813911 tcgtggcttccacacaaagcctttagctg 6813883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 6794776 - 6794553
Alignment:
Q  16 taagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatcca 115  Q
    |||| ||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6794776 taagcaatcacatctgttgaatgtttagcaaaatattctattggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatcca 6794677  T
Q  116 tttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccattcacg 215  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| ||||||||||||||||  ||    
T  6794676 tttcttctattgtatacacctgataaacttcatacaatctaagaagatgaatatttcttgttgtgattattattctactccccggaccaaaccatttgcg 6794577  T
Q  216 gcttccacacaaagcctttagctg 239  Q
    ||| |||||||| |||||||||||    
T  6794576 gctaccacacaatgcctttagctg 6794553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 6589667 - 6589895
Alignment:
Q  11 cagaataagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttc 110  Q
    ||||||||| ||||||||||||||||||  | |||||||||||| | ||||||||||| ||||||||||||||||| || |||||||| |||||| |||     
T  6589667 cagaataagcaatcacatctgttgaatgcgtagcaaaatcttcttttggacttggttgtttgaatgcatgccaactaaacagcttaagtgattcaatttt 6589766  T
Q  111 atccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccat 210  Q
     |||||||||||||||||||||| |||||||||| || |||||||||||||| |||||| ||| |||||||||||||||||||| ||||||||||||||     
T  6589767 gtccatttcttctattgtatacatttgataaactccacacaatctaagaagatgcatatctcttgttgtgattattattctactccccggaccaaaccaa 6589866  T
Q  211 tcacggcttccacacaaagcctttagctg 239  Q
    |||||||| ||||||||||||||||||||    
T  6589867 tcacggctaccacacaaagcctttagctg 6589895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 6726267 - 6726039
Alignment:
Q  11 cagaataagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttc 110  Q
    ||||||| | ||||||||||||||||||||| |||||||||||| | ||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  6726267 cagaatatgcaatcacatctgttgaatgtttagcaaaatcttcttttggacttgattgcttgaatgcatgccaactgaaaagcttgagagattcactttc 6726168  T
Q  111 atccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccat 210  Q
    |||||||||||||||||||||||||  || ||||  | || | ||||||||| || ||| ||| |||||||| || |||||||| |||||||||||||||    
T  6726167 atccatttcttctattgtatacactacatcaactggacacgaactaagaagatgcttatctctcgttgtgatgataattctactccccggaccaaaccat 6726068  T
Q  211 tcacggcttccacacaaagcctttagctg 239  Q
    |||||||||||| |||| |||||||||||    
T  6726067 tcacggcttccatacaatgcctttagctg 6726039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 6649392 - 6649168
Alignment:
Q  11 cagaataagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttc 110  Q
    ||||||||| ||||||||||||||||||| | |||||||||| | | ||||||||||| ||||||||||||||||||||||||| |||||||||||| ||    
T  6649392 cagaataagcaatcacatctgttgaatgtgtagcaaaatcttttgtaggacttggttgattgaatgcatgccaactgaaaagctcaagagattcactatc 6649293  T
Q  111 atccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccat 210  Q
      ||||||||||||| |||||||||| || ||||  | || ||||||||||| |||||| ||| |||||||| || |||||||| |||||||||||||||    
T  6649292 tcccatttcttctatagtatacacttcatcaactcgacacgatctaagaagatgcatatctctcgttgtgatgataattctactccccggaccaaaccat 6649193  T
Q  211 tcacggcttccacacaaagccttta 235  Q
    |||||||||||||||||||||||||    
T  6649192 tcacggcttccacacaaagccttta 6649168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 6624061 - 6624284
Alignment:
Q  13 gaataagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcat 112  Q
    ||||||| ||||||||||||||||||| | |||||| |||||  |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  6624061 gaataagcaatcacatctgttgaatgtgtagcaaaaccttctgccggacttggttgcttgaatgcatgccaactgaaaagctcaagagattcactctcat 6624160  T
Q  113 ccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccattc 212  Q
    |||||||||| |||||||||||| | | ||||  | || | ||||||||| ||||||  || |||||||| || |||||||| |||||||||||||||||    
T  6624161 ccatttcttcaattgtatacactaggtcaactctagacgacctaagaagatgcatatcccttgttgtgatgataattctactccccggaccaaaccattc 6624260  T
Q  213 acggcttccacacaaagcctttag 236  Q
    ||||||||||||||||||||||||    
T  6624261 acggcttccacacaaagcctttag 6624284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 6535282 - 6535507
Alignment:
Q  11 cagaataagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttc 110  Q
    ||||||||| ||||||||| ||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||   ||||| |||||||||    
T  6535282 cagaataagcaatcacatccgttgaatgtgtagcaaaatcttctatcggacttggtttcttgaatgcatgccaactgaaaagagcaagagcttcactttc 6535381  T
Q  111 atccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccat 210  Q
    |||||||||||||||| |||||||||||| ||||    |  ||||||||||| ||||||  || |||||||| ||||||||||| |||| ||||||||||    
T  6535382 atccatttcttctattttatacacttgatcaactctgcatgatctaagaagatgcatatcccttgttgtgatgattattctactccccgaaccaaaccat 6535481  T
Q  211 tcacggcttccacacaaagcctttag 236  Q
    || |||||||||||||||||||||||    
T  6535482 tctcggcttccacacaaagcctttag 6535507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 6751184 - 6750959
Alignment:
Q  11 cagaataagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttc 110  Q
    ||||||||| |||||||||| |||||||| | ||||||  |||| | || |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6751184 cagaataagcaatcacatcttttgaatgtgtagcaaaaatttctgttggccttggttgcttgaatgcatgccaactgaaaagctcaagagattcactttc 6751085  T
Q  111 atccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccat 210  Q
     | |||||||| ||||| ||||||||||| ||| | | | ||| ||||||||  ||||||||| |||||||| ||||||||||| || ||||||||||||    
T  6751084 gttcatttcttttattgcatacacttgatcaaccttacataatgtaagaagatccatatttcttgttgtgatgattattctactccctggaccaaaccat 6750985  T
Q  211 tcacggcttccacacaaagcctttag 236  Q
    |||||||||||||||||||| |||||    
T  6750984 tcacggcttccacacaaagcttttag 6750959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 6756802 - 6756585
Alignment:
Q  11 cagaataagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttc 110  Q
    ||||||||| |||||| ||  |||||||| | | ||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  6756802 cagaataagcaatcacttcatttgaatgtgtagaaaactcttctttcggacttggttgcttgaatgcatgccaactgaaaagctcaagagattcgctttc 6756703  T
Q  111 atccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccat 210  Q
    ||||||||||| ||||  ||| ||||||| ||||  |||  |||||||||||  | ||| ||| |||||||| |||||||||||||||||||||||||||    
T  6756702 atccatttcttttatttcataaacttgatcaactctataagatctaagaagattcctatctcttgttgtgatgattattctactacccggaccaaaccat 6756603  T
Q  211 tcacggcttccacacaaa 228  Q
    ||||||||||||||||||    
T  6756602 tcacggcttccacacaaa 6756585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 43 - 235
Target Start/End: Original strand, 6547565 - 6547757
Alignment:
Q  43 gcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctattgtatacacttgataaa 142  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| ||||  ||||||||||| ||    
T  6547565 gcaaaatcttctattggacttggttgcttgaatgcatgccaactgaatagctcaagagattcaatttcatccatttcttttatttcatacacttgatcaa 6547664  T
Q  143 cttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagccttta 235  Q
    ||    || |||||||||||||||||| ||| |||||||| |||||||| || || |||||||||||||  |||||||||||||| |||||||    
T  6547665 ctctgcacgatctaagaagacgcatatctcttgttgtgatgattattctgctcccgggaccaaaccatttgcggcttccacacaatgccttta 6547757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 6499978 - 6500209
Alignment:
Q  11 cagaataagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttc 110  Q
    |||||||||||| ||||||| |||||||| | |||||||||||| | ||| |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  6499978 cagaataagaaaccacatcttttgaatgtgtagcaaaatcttctgttggagttggttgcttgaatgcatgccagctgaaaagctcaagagattcactttc 6500077  T
Q  111 atccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccat 210  Q
     ||||| |||| ||||| | |||| | || ||||  | |  || |||||||| ||| || ||| |||||||| ||||||||||| |||||||||||||||    
T  6500078 gtccatatcttgtattgcacacacctcatcaactctacatgatttaagaagatgcaaatctcttgttgtgataattattctactccccggaccaaaccat 6500177  T
Q  211 tcacggcttccacacaaagcctttagctgatc 242  Q
    || ||||||||| ||||||||||||| |||||    
T  6500178 tcgcggcttccaaacaaagcctttagttgatc 6500209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 6714137 - 6713923
Alignment:
Q  22 atcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttctt 121  Q
    ||||||||| |||||||| | |||||| |||||  ||||| ||||||||| ||||||||||| |  ||||||| ||||||||| || ||||||||||||     
T  6714137 atcacatctcttgaatgtgtagcaaaaccttctggcggacatggttgcttaaatgcatgccagcaaaaaagctcaagagattccctctcatccatttcta 6714038  T
Q  122 ctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccattcacggcttcc 221  Q
    ||| |||||||||| ||| ||||  | || |||||||||||||||||| ||| |||||||| |||| |||||| ||||||||||||||||  ||||||||    
T  6714037 ctactgtatacactagatcaactctacacgatctaagaagacgcatatctcttgttgtgatgattactctactccccggaccaaaccatttgcggcttcc 6713938  T
Q  222 acacaaagcctttag 236  Q
    |||||||||||||||    
T  6713937 acacaaagcctttag 6713923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 46 - 213
Target Start/End: Complemental strand, 8413122 - 8412955
Alignment:
Q  46 aaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctattgtatacacttgataaactt 145  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||| ||||     
T  8413122 aaatcttttgtcggacttggttgcttgaatgcatgccaactgaaaagcttgagagattcactttcgtccatttcttttattgtatacacttgatcaactc 8413023  T
Q  146 catacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccattca 213  Q
     | |  || |||||||| |||| | ||| |||||||| ||||||||||| ||||||||||||||||||    
T  8413022 tacatgatgtaagaagatgcatctctcttgttgtgatgattattctacttcccggaccaaaccattca 8412955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 6672983 - 6672761
Alignment:
Q  21 aatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttct 120  Q
    ||||||||||  |||||||   |||||||||||||  ||| ||||| ||||||| |||||||||||||||||||  ||||||||||||||||||||||||    
T  6672983 aatcacatcttctgaatgtgcagcaaaatcttctactggaattggtagcttgaacgcatgccaactgaaaagctctagagattcactttcatccatttct 6672884  T
Q  121 tctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacc-cggaccaaaccattcacggctt 219  Q
    | ||||| ||||||| ||| ||||  | || ||||||||||| |||||| ||| || ||||| |||| |||||| ||  |||||||||||||||  ||||    
T  6672883 tgtattgcatacactcgatcaactctacacgatctaagaagatgcatatctcttgtggtgatgattactctactcccttggaccaaaccattcatagctt 6672784  T
Q  220 ccacacaaagcctttagctgatc 242  Q
    |||||||||||||||||||||||    
T  6672783 ccacacaaagcctttagctgatc 6672761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 4925940 - 4925774
Alignment:
Q  70 ttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctatt-gtatacacttgataaacttcatacaatctaagaagacgcata 168  Q
    |||||||||||||||| || |||||||| |||||||||||  ||||||||||||||| ||||||| | ||| ||||  | || ||| ||||||| | |||    
T  4925940 ttgaatgcatgccaacagagaagcttaatagattcacttttgtccatttcttctatttgtatacattcgatcaactctacacgatccaagaagatgaata 4925841  T
Q  169 tttctagttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagccttta 235  Q
    ||||| |||||||| |||||||||||||||||||||||||  ||  |||||||||||||||||||||    
T  4925840 tttcttgttgtgatgattattctactacccggaccaaaccggtcgtggcttccacacaaagccttta 4925774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 6834505 - 6834286
Alignment:
Q  11 cagaataagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttc 110  Q
    ||||||||| ||||||||||||||||||| | ||||||||   |   ||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  6834505 cagaataagcaatcacatctgttgaatgtgtagcaaaatcgattggaggacttggtagcttgaatgcatgccaactgaaaagctcaagagattcactttc 6834406  T
Q  111 atccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccat 210  Q
     |||||||||| ||| | ||||| ||||      ||| |  |||| || || | ||||| ||| || ||||| ||||||||||| || | ||||||||||    
T  6834405 gtccatttcttttatagcatacaattga------tcacatgatcttaggagcctcatatctcttgtcgtgatgattattctacttccggaaccaaaccat 6834312  T
Q  211 tcacggcttccacacaaagcctttag 236  Q
    || || |||||||||||||| |||||    
T  6834311 tcgcgacttccacacaaagcatttag 6834286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 239
Target Start/End: Original strand, 4322800 - 4322973
Alignment:
Q  66 ttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgc 165  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||  ||| | || | ||  | |||   ||    |||||| | | ||    
T  4322800 ttgcttgaatgcatgccaactaaaaagctcaagagattcactttcatccatttctttcattatgtatattttgtcaaccctatttcctctaagtatatgc 4322899  T
Q  166 atatttctagttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagcctttagctg 239  Q
     ||| |||||||||||| |||||||||||||| ||| ||||||||| ||  |||||||||||||| ||||||||    
T  4322900 ttatctctagttgtgatgattattctactacctggagcaaaccatttacaacttccacacaaagcatttagctg 4322973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 4333877 - 4333801
Alignment:
Q  45 aaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttctt 121  Q
    |||||||||| | ||||| | |||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||    
T  4333877 aaaatcttctgtgggactcgtttgcttgaatgcatgcaaactaaaaagctcaagagattcactttcatccatttctt 4333801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 236
Target Start/End: Complemental strand, 4358735 - 4358544
Alignment:
Q  45 aaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctattgtatacacttgataaact 144  Q
    |||||||||| | || |||| ||||||||| || |||||||| ||||||| ||||||||||||||||||||||||||  ||| | || | || || ||||    
T  4358735 aaaatcttctctaggccttgtttgcttgaacgcgtgccaactaaaaagctcaagagattcactttcatccatttctttcattatgtatattttatcaact 4358636  T
Q  145 tcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagcctttag 236  Q
    |  | |  |||||| | | || |||  ||||||||||| || |||||||| || ||| ||||||||| ||  |||||||||||||| |||||    
T  4358635 tgtttccctctaagtatatgcttatccctagttgtgatgataattctacttcctggagcaaaccatttacaacttccacacaaagcatttag 4358544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 230
Target Start/End: Complemental strand, 25568319 - 25568132
Alignment:
Q  43 gcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctattgtatacacttgataaa 142  Q
    |||||||| ||| | || |||| |||||||||||||||||| || ||||||| ||  ||||||||||||  ||||||||  ||||| || | ||||| ||    
T  25568319 gcaaaatcatctttagggcttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaa 25568220  T
Q  143 cttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagc 230  Q
    ||  |||   ||||||||    ||||| |||||| ||||| | |||||||||||||| ||||||||||| ||| | ||||||||||||    
T  25568219 ctctatatcctctaagaatgttcatatctctagtggtgatgactattctactacccgaaccaaaccattgacgacgtccacacaaagc 25568132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 4343244 - 4343191
Alignment:
Q  68 gcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttctt 121  Q
    ||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||    
T  4343244 gcttgaatgcatgccaactaaaaagctcaagagattcacttccatccatttctt 4343191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 4351554 - 4351478
Alignment:
Q  45 aaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttctt 121  Q
    |||||||||| | |||||   ||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||||||    
T  4351554 aaaatcttctttgggactcttttgcttgaatgcatgccaactaaaacgctcaagagattcactttcattcatttctt 4351478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 4126135 - 4126190
Alignment:
Q  66 ttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttctt 121  Q
    ||||||||| ||||||||||| ||||| | ||||||||||||||||||||||||||    
T  4126135 ttgcttgaaagcatgccaactaaaaagttcaagagattcactttcatccatttctt 4126190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 4925710 - 4925769
Alignment:
Q  175 gttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagccttt 234  Q
    |||||||| |||||||||||||| |||||||||||  | |||||||||||||||||||||    
T  4925710 gttgtgatgattattctactacctggaccaaaccagccgcggcttccacacaaagccttt 4925769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 4135482 - 4135532
Alignment:
Q  69 cttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttc 119  Q
    |||||||||||||||||| ||||||| |||||||||||||||||| |||||    
T  4135482 cttgaatgcatgccaactaaaaagctcaagagattcactttcatctatttc 4135532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 4343137 - 4343070
Alignment:
Q  175 gttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagcctttagctgatc 242  Q
    |||||||| ||||||||||| || ||| ||||||||  ||| |||||||||||||| ||||| |||||    
T  4343137 gttgtgatgattattctactccctggagcaaaccatctacgacttccacacaaagcatttagttgatc 4343070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 6832432 - 6832365
Alignment:
Q  175 gttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagcctttagctgatc 242  Q
    |||||||| |||||| | || ||  ||||||||||||| ||  |||||||||||||||||||||||||    
T  6832432 gttgtgatgattattttgcttcctcgaccaaaccattcccgatttccacacaaagcctttagctgatc 6832365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 7890541 - 7890575
Alignment:
Q  71 tgaatgcatgccaactgaaaagcttaagagattca 105  Q
    |||||||||||||||| ||||||||||||||||||    
T  7890541 tgaatgcatgccaactaaaaagcttaagagattca 7890575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 6811914 - 6811850
Alignment:
Q  175 gttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagcctttagctg 239  Q
    |||||||| |||||| | ||||| |  |||||||||||||| ||||| |||||||| ||||||||    
T  6811914 gttgtgatgattattttgctaccggtgccaaaccattcacgacttccgcacaaagcgtttagctg 6811850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 11527 - 11750
Alignment:
Q  16 taagaaatcacatctgttgaatgtttcgcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatcca 115  Q
    |||| ||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11527 taagcaatcacatctgttgaatgtttagcaaaatattctattggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatcca 11626  T
Q  116 tttcttctattgtatacacttgataaacttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccattcacg 215  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| ||||||||||||||||  ||    
T  11627 tttcttctattgtatacacctgataaacttcatacaatctaagaagatgaatatttcttgttgtgattattattctactccccggaccaaaccatttgcg 11726  T
Q  216 gcttccacacaaagcctttagctg 239  Q
    ||| |||||||| |||||||||||    
T  11727 gctaccacacaatgcctttagctg 11750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 66 - 230
Target Start/End: Original strand, 36215590 - 36215754
Alignment:
Q  66 ttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctattgtatacacttgataaacttcatacaatctaagaagacgc 165  Q
    ||||||||||||||||||||| ||||||| ||  ||||||||||||||||||||||  ||||  || ||||| | ||||  || |  |||||| | | ||    
T  36215590 ttgcttgaatgcatgccaactaaaaagctcaattgattcactttcatccatttctttcattgcgtatacttggtcaactctattccctctaagtatatgc 36215689  T
Q  166 atatttctagttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagc 230  Q
     ||| |||||||||||| ||||||||||| |||  ||||||||||| ||| ||||||||||||||    
T  36215690 ctatctctagttgtgatgattattctactccccacaccaaaccattgacgacttccacacaaagc 36215754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 134
Target Start/End: Original strand, 34727413 - 34727503
Alignment:
Q  44 caaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctattgtatacac 134  Q
    ||||| ||||||| ||| ||||||||||||||||||||||||| ||||||| |||||||||| |  ||||||||||||  ||| |||||||    
T  34727413 caaaaccttctataggaattggttgcttgaatgcatgccaactaaaaagctcaagagattcattgccatccatttctttcattctatacac 34727503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 34730571 - 34730632
Alignment:
Q  44 caaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattca 105  Q
    ||||| ||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||||    
T  34730571 caaaaccttctataggaattggttgcttgaatacatgccaactgaaaagctcaagagattca 34730632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 18929295 - 18929223
Alignment:
Q  62 ttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctattgtatacac 134  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| | || ||||||||||  ||| |||||||    
T  18929295 ttggttgcttgaatgcatgccaactaaaaagctcaagagattcattgtcgtccatttctttcattctatacac 18929223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 34721095 - 34721169
Alignment:
Q  43 gcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatt 117  Q
    |||||| ||||| | ||| |||||||||||||||||| |||||| ||||| | |||||||||||| |||||||||    
T  34721095 gcaaaaccttctcttggaattggttgcttgaatgcataccaactaaaaagttcaagagattcactctcatccatt 34721169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 34735170 - 34735231
Alignment:
Q  44 caaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattca 105  Q
    ||||| ||||||| ||| ||||||| ||||||||||||||||| ||||||| ||||||||||    
T  34735170 caaaaccttctataggaattggttgtttgaatgcatgccaactaaaaagctcaagagattca 34735231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 18924399 - 18924337
Alignment:
Q  43 gcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattca 105  Q
    ||||||||||| || ||| |||||||||||||||||| | |||| ||||||| ||||||||||    
T  18924399 gcaaaatcttcaataggatttggttgcttgaatgcatacaaactaaaaagctcaagagattca 18924337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 43 - 230
Target Start/End: Original strand, 5148634 - 5148821
Alignment:
Q  43 gcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttctattgtatacacttgataaa 142  Q
    |||||||||||| | ||||| | ||||||||||||||||||||| |||||| |||  ||||||| ||||||||||||||  ||| | || || || | ||    
T  5148634 gcaaaatcttctctaggactcgcttgcttgaatgcatgccaactaaaaagcataattgattcaccttcatccatttctttcattttgtatacatggtcaa 5148733  T
Q  143 cttcatacaatctaagaagacgcatatttctagttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagc 230  Q
    ||  || |  ||| || | | |||||| |||||||||||| ||||||||||| ||||  |||||||||| ||| ||||||||||||||    
T  5148734 ctctattccctctcagtatatgcatatctctagttgtgataattattctacttcccgagccaaaccattgacgacttccacacaaagc 5148821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 5075406 - 5075484
Alignment:
Q  43 gcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttctt 121  Q
    |||||||||||||| ||||||| ||| ||||||||||||||||| ||||||| ||  ||||||||||||||||||||||    
T  5075406 gcaaaatcttctataggacttgcttgtttgaatgcatgccaactaaaaagctcaattgattcactttcatccatttctt 5075484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 5381974 - 5381897
Alignment:
Q  45 aaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttcttc 122  Q
    |||||||||| | || ||||||||||||||||||||||| || ||||||| ||  |||||||  ||||||||| ||||    
T  5381974 aaaatcttctgtaggccttggttgcttgaatgcatgccagctaaaaagctcaattgattcacaatcatccattgcttc 5381897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 5104549 - 5104620
Alignment:
Q  45 aaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccat 116  Q
    |||||||| | |||||||   ||||||||||||||||||||| || |||| ||  |||||||||||||||||    
T  5104549 aaaatcttttgtcggactcacttgcttgaatgcatgccaactaaatagctcaattgattcactttcatccat 5104620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 121
Target Start/End: Complemental strand, 5342006 - 5341943
Alignment:
Q  58 ggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttctt 121  Q
    ||||||| ||||||||| ||||||||||| || |||| ||| |||||| || ||||||||||||    
T  5342006 ggacttgcttgcttgaacgcatgccaactaaatagctcaagtgattcatttgcatccatttctt 5341943  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 5423948 - 5423893
Alignment:
Q  175 gttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagc 230  Q
    |||||||| ||||||||||| |||| ||||||||||| | | ||||||||||||||    
T  5423948 gttgtgataattattctactccccgaaccaaaccatttatgacttccacacaaagc 5423893  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 5068772 - 5068822
Alignment:
Q  66 ttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccat 116  Q
    |||||||||||| |||||||| || |||||||  |||||||||||||||||    
T  5068772 ttgcttgaatgcgtgccaactaaatagcttaattgattcactttcatccat 5068822  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 5068884 - 5068942
Alignment:
Q  178 gtgattattattctactacccggaccaaaccattcacggcttccacacaaagcctttag 236  Q
    ||||| ||||||||||| |||| ||||||||| | ||| |||||||||||||| |||||    
T  5068884 gtgatgattattctacttcccgaaccaaaccacttacgacttccacacaaagcatttag 5068942  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 5183627 - 5183701
Alignment:
Q  43 gcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatt 117  Q
    |||||| ||||| | |||| || ||||||||||||||||||||| || |||| ||  ||||| ||||||||||||    
T  5183627 gcaaaaccttctctaggacctgcttgcttgaatgcatgccaactaaatagctcaattgattcgctttcatccatt 5183701  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 5356306 - 5356364
Alignment:
Q  58 ggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccat 116  Q
    ||||||| ||||||||||||||||||||| || |||| ||  |||||||| ||||||||    
T  5356306 ggacttgcttgcttgaatgcatgccaactaaatagctcaattgattcactgtcatccat 5356364  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 5368764 - 5368714
Alignment:
Q  66 ttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccat 116  Q
    |||||| ||||||||||||||||| |||| ||  |||||||||||||||||    
T  5368764 ttgcttaaatgcatgccaactgaatagctcaattgattcactttcatccat 5368714  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 5395370 - 5395292
Alignment:
Q  43 gcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttctt 121  Q
    |||||||||||| | ||||| | ||||||||||||||||||||| || |||| ||  ||||| ||| | ||||||||||    
T  5395370 gcaaaatcttctcttggactcgcttgcttgaatgcatgccaactaaagagctcaattgattcgcttccgtccatttctt 5395292  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 5431613 - 5431547
Alignment:
Q  164 gcatatttctagttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagc 230  Q
    |||||||||| |||||||| ||||||||||| ||   ||||||||| | ||| ||||||||||||||    
T  5431613 gcatatttctggttgtgataattattctactccctaaaccaaaccaattacgacttccacacaaagc 5431547  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 5175192 - 5175115
Alignment:
Q  44 caaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccatttctt 121  Q
    |||| |||||||| |||||   ||| ||||||||||||||| | || |||| ||  ||||||||||||||||||||||    
T  5175192 caaattcttctatgggactcacttgtttgaatgcatgccaattaaagagctcaattgattcactttcatccatttctt 5175115  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 5424080 - 5424007
Alignment:
Q  43 gcaaaatcttctatcggacttggttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccat 116  Q
    |||||||||| | | ||||| | ||||||||| ||||||||||| || |||| ||  |||||||||||||||||    
T  5424080 gcaaaatcttttgtaggactcgcttgcttgaaggcatgccaacttaatagctcaattgattcactttcatccat 5424007  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 5094227 - 5094175
Alignment:
Q  184 attattctactacccggaccaaaccattcacggcttccacacaaagcctttag 236  Q
    ||||||||||| |||||||||||||||| | | ||||| |||||||| |||||    
T  5094227 attattctactccccggaccaaaccatttatgacttccgcacaaagcatttag 5094175  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 5431711 - 5431659
Alignment:
Q  66 ttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccattt 118  Q
    ||||||||||||||||||  | ||||||| ||| |||||||| ||||||||||    
T  5431711 ttgcttgaatgcatgccatataaaaagctcaagtgattcactgtcatccattt 5431659  T

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Target: scaffold0294 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 10366 - 10416
Alignment:
Q  66 ttgcttgaatgcatgccaactgaaaagcttaagagattcactttcatccat 116  Q
    ||||||||||||||||||||| ||||||| ||  |||||||| ||||||||    
T  10366 ttgcttgaatgcatgccaactaaaaagctcaattgattcactatcatccat 10416  T

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Target: scaffold0294; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 10475 - 10536
Alignment:
Q  175 gttgtgattattattctactacccggaccaaaccattcacggcttccacacaaagcctttag 236  Q
    ||||| || ||||||||| | || | ||||||||||||||| |||||||||||||| |||||    
T  10475 gttgtaatgattattctagtccctgaaccaaaccattcacgacttccacacaaagcatttag 10536  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 6907450 - 6907495
Alignment:
Q  76 gcatgccaactgaaaagcttaagagattcactttcatccatttctt 121  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||||    
T  6907450 gcatgccaactgaaaagctcaagggactcattttcatccatttctt 6907495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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