View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_high_47 (Length: 243)
Name: NF4426_high_47
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_high_47 |
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| [»] scaffold0449 (1 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 11685 - 11459
Alignment:
| Q |
1 |
ccttccaccagagacttcaaccggagtgatttcccacccaaagtaaccattttcttcggcagaaattccacgttcaaaactctgaactgcataattatcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11685 |
ccttccaccagagacttcaaccggagtgatttcccacccaaagtaaccattttcttgggcagaaattccacgttcaaaactctgaactgcataattatcc |
11586 |
T |
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| Q |
101 |
tgtacnnnnnnncacagacatcaacaaaaatctaatataataatcgtgccgaaacctatttgaacagaaatcaatcccaaaatacctggtcttctcttgt |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11585 |
tgtacaaaaaaacacagacatcaacaaaaatctaatataataatcgtgccgaaacctatttgaacagaaatcaatcccaaaatacctggtcttctcttgt |
11486 |
T |
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| Q |
201 |
tattgaatggttatctgcacagagttc |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
11485 |
tattgaatggttatctgcacagagttc |
11459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 43050520 - 43050746
Alignment:
| Q |
1 |
ccttccaccagagacttcaaccggagtgatttcccacccaaagtaaccattttcttcggcagaaattccacgttcaaaactctgaactgcataattatcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43050520 |
ccttccaccagagacttcaaccggagtgatttcccacccaaagtaaccattttcttgggcagaaattccacgttcaaaactctgaactgcataattatcc |
43050619 |
T |
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| Q |
101 |
tgtacnnnnnnncacagacatcaacaaaaatctaatataataatcgtgccgaaacctatttgaacagaaatcaatcccaaaatacctggtcttctcttgt |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43050620 |
tgtacaaaaaaacacagacatcaacaaaaatctaatataataatcgtgccgaaacctatttgaacagaaatcaatcccaaaatacctggtcttctcttgt |
43050719 |
T |
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| Q |
201 |
tattgaatggttatctgcacagagttc |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
43050720 |
tattgaatggttatctgcacagagttc |
43050746 |
T |
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Back To:
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