View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4426_high_56 (Length: 226)
Name: NF4426_high_56
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_high_56 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 41300353 - 41300128
Alignment:
| Q |
1 |
atttaatttaatttcaaagtgagaaatagaggcatgataaaaaacatattgaagcaatatattatctaagtgtaacttctcaatggaagcaacatcatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41300353 |
atttaatttaatttcaaagtgagaaatagaggcatgataaaaaacatattgaagcaatatattatctaagtgtaacttctcaatggaagcaacatcatgt |
41300254 |
T |
|
| Q |
101 |
atatattaatataccaataccaatatactgagctagctagttaagatttaaaagtatcaatctgtctaatttaattcattaatttcactagtctcagttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41300253 |
atatattaatataccaataccaatatactgagctagctagttaagatttaaaagtatcaatctgtctaatttaattcattaatttcactagtctcagttc |
41300154 |
T |
|
| Q |
201 |
ccctattaatataaatggttatacca |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
41300153 |
ccctattaatataaatggttatacca |
41300128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University