View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4426_high_6 (Length: 469)
Name: NF4426_high_6
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 20 - 456
Target Start/End: Complemental strand, 6701173 - 6700737
Alignment:
| Q |
20 |
gtacacataccatataaccttcaataatgtatgacaattctactatgcaacactaatatacttcaacgatgaagatccaattatctttgctttgatacat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6701173 |
gtacacataccatataaccttcaataatgtatgacaattctactatgcaacactaatatacttcaacgatgaagatccaattatctttgctttgatacat |
6701074 |
T |
|
| Q |
120 |
atatagacgccacttgccaccacttaaattgaagcgtcttgttgatgtgatttagtatcaacatgaacatgttagcggtgtcccacatttccataaaacc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6701073 |
atatagacgccacttgccaccacttaaattgaagcatcttgttgatgtgatttagtatcaacatgaacatgttagcggtgtcccacatttccataaaacc |
6700974 |
T |
|
| Q |
220 |
tattatgagtgtcgtcgccaagaccacaatagttctctattatgattctattaaggtatgaacacacaaatattctacttatgaatgttgattcttaagt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6700973 |
tattatgagtgtcgtcgccaagaccacaatagttctctattatgattctattaaggtatgaacacacaaatattctacttatgaatgttcattcttaagt |
6700874 |
T |
|
| Q |
320 |
tcaagtgtgagtagttaagtctcacattaactatgaatatgttaaatgttgaatagttaagtttcacatcaataagagaggtgacccacatctctaatga |
419 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6700873 |
tcaagtgtgagtagttaaatctcacatcgattatgaatatgttaaacgttgaatagttaagtctcacatcaacaagagaggtgacccacatctctaatgg |
6700774 |
T |
|
| Q |
420 |
cgtaagatttttgttgaagaatcagtgaattcatctc |
456 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6700773 |
cgtaagatttttgttggagaatcagtgaattcatctc |
6700737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 13289623 - 13289583
Alignment:
| Q |
317 |
agttcaagtgtgagtagttaagtctcacattaactatgaat |
357 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| ||||||| |
|
|
| T |
13289623 |
agttcaagtatgagtagctaagtctcacattaattatgaat |
13289583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 370
Target Start/End: Original strand, 11199925 - 11199973
Alignment:
| Q |
322 |
aagtgtgagtagttaagtctcacattaactatgaatatgttaaatgttg |
370 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||| || |||||||| |
|
|
| T |
11199925 |
aagtgtgagtggttaagtctcacattgcctatgaataggtaaaatgttg |
11199973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University