View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_high_8 (Length: 431)
Name: NF4426_high_8
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 9 - 413
Target Start/End: Complemental strand, 937658 - 937254
Alignment:
| Q |
9 |
agcacagacagacgtgattgtacacaatgcaacaagaaagaacgacaacataatgatttcataattcatccgcgtctctagtctacttctttttgatgga |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
937658 |
agcacaaacagacgtgattgtacacaatgcaacaagaaagaacgacaacataatgatttcataattcatccgcgtctctagtctacttcttttcgatgga |
937559 |
T |
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| Q |
109 |
gctcctgaattgttaagcatagctttagtctcgcggccacaatagactgcaacaccaagtgcccaactagtattcttaagctcacatcctctaagcacaa |
208 |
Q |
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| T |
937558 |
gctcctgaattgttaagcatagctttagtctcgcggccacaatagactgcaacaccaagtgcccaactagtattcttaagctcacatcctctaagcacaa |
937459 |
T |
|
| Q |
209 |
tgttggttgatccaagtgataacttcttaccatcgatttccatattcgccataaatccatatatattcctattcggtttctcacacttgatcaaaccagt |
308 |
Q |
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| T |
937458 |
tgttggttgatccaagtgataacttcttaccatcgatttccatattcgccataaatccatatatattcctattcggtttctcacacttgatcaaaccagt |
937359 |
T |
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| Q |
309 |
atacctcggttgaacctttgaacctgtctcctgtttcgcatacctagtcttcaaattactctcaccatcaagattaatagtttgcacatatgcaacacca |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
937358 |
atacctcggttgaacctttgaacctgtctcctgtttcgcatacctagtcttcaaattactctcaccatcaagattaatagtttgcacatatgcaacacca |
937259 |
T |
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| Q |
409 |
gttgg |
413 |
Q |
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| T |
937258 |
gttgg |
937254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 106 - 315
Target Start/End: Complemental strand, 16942045 - 16941836
Alignment:
| Q |
106 |
ggagctcctgaattgttaagcatagctttagtctcgcggccacaatagactgcaacaccaagtgcccaactagtattcttaagctcacatcctctaagca |
205 |
Q |
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| T |
16942045 |
ggagctcctgagttgttgagcatagcttttgtctcacgaccacaatacacggcaacaccaaccacacaattagtattcttaagttcacatcctctaagta |
16941946 |
T |
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| Q |
206 |
caatgttggttgatccaagtgataacttcttaccatcgatttccatattcgccataaatccatatatattcctattcggtttctcacacttgatcaaacc |
305 |
Q |
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| T |
16941945 |
caatattcgaggaaccaagtgacaatctcttttcatcaacctccattgtagcctgaaatccatatatattcctatttggtttctcgcacttaatcaaacc |
16941846 |
T |
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| Q |
306 |
agtatacctc |
315 |
Q |
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| T |
16941845 |
actaaacctc |
16941836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 410
Target Start/End: Complemental strand, 16941811 - 16941735
Alignment:
| Q |
334 |
gtctcctgtttcgcatacctagtcttcaaattactctcaccatcaagattaatagtttgcacatatgcaacaccagt |
410 |
Q |
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||||| ||||| ||||| ||||||||||||||| ||||||||| ||||||| |||||| || || ||||||||||| |
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| T |
16941811 |
gtctcttgttttgcatatctagtcttcaaattagactcaccatctagattaagagtttgaacgtaagcaacaccagt |
16941735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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