View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4426_low_10 (Length: 428)

Name: NF4426_low_10
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4426_low_10
NF4426_low_10
[»] chr4 (37 HSPs)
chr4 (85-410)||(8402095-8402420)
chr4 (44-101)||(6841814-6841871)
chr4 (46-102)||(1492854-1492910)
chr4 (46-102)||(8165757-8165813)
chr4 (16-67)||(8402043-8402094)
chr4 (43-102)||(33883286-33883345)
chr4 (53-102)||(31763101-31763150)
chr4 (58-103)||(36309423-36309468)
chr4 (46-103)||(43375513-43375570)
chr4 (53-102)||(53865236-53865285)
chr4 (43-102)||(21995662-21995721)
chr4 (52-91)||(29825715-29825754)
chr4 (53-96)||(55782636-55782679)
chr4 (53-96)||(55846816-55846859)
chr4 (53-103)||(8157281-8157331)
chr4 (53-103)||(9813137-9813187)
chr4 (53-91)||(14499253-14499291)
chr4 (41-103)||(17109709-17109771)
chr4 (53-91)||(50070721-50070759)
chr4 (53-102)||(562777-562826)
chr4 (53-102)||(1492674-1492723)
chr4 (53-102)||(2124346-2124395)
chr4 (53-102)||(2124538-2124587)
chr4 (53-102)||(12722931-12722980)
chr4 (53-102)||(25715645-25715694)
chr4 (53-102)||(25715720-25715769)
chr4 (53-102)||(31762931-31762980)
chr4 (53-102)||(37059713-37059762)
chr4 (53-102)||(43374449-43374498)
chr4 (53-102)||(54895406-54895455)
chr4 (53-102)||(54895576-54895625)
chr4 (58-102)||(9967689-9967732)
chr4 (53-93)||(17109920-17109960)
chr4 (46-102)||(30779338-30779394)
chr4 (53-93)||(33819693-33819733)
chr4 (53-93)||(36924243-36924283)
chr4 (53-101)||(38010704-38010752)
[»] chr7 (12 HSPs)
chr7 (169-406)||(5475297-5475534)
chr7 (53-102)||(6846581-6846630)
chr7 (53-102)||(44426600-44426649)
chr7 (53-102)||(46004528-46004577)
chr7 (53-101)||(26945708-26945756)
chr7 (53-103)||(43742251-43742301)
chr7 (58-91)||(25779708-25779741)
chr7 (53-102)||(34227678-34227727)
chr7 (53-102)||(44426792-44426841)
chr7 (46-102)||(5728873-5728929)
chr7 (55-83)||(33798742-33798770)
chr7 (58-102)||(38837547-38837591)
[»] chr2 (20 HSPs)
chr2 (46-102)||(22588313-22588369)
chr2 (43-103)||(19246854-19246914)
chr2 (53-102)||(37867348-37867397)
chr2 (44-102)||(31783786-31783844)
chr2 (46-102)||(12449049-12449105)
chr2 (53-101)||(19246664-19246712)
chr2 (59-102)||(15252847-15252890)
chr2 (44-103)||(34726788-34726847)
chr2 (45-99)||(22596298-22596352)
chr2 (53-103)||(24183589-24183639)
chr2 (44-102)||(31711503-31711561)
chr2 (53-103)||(37867156-37867206)
chr2 (48-93)||(20661393-20661438)
chr2 (53-102)||(20661588-20661637)
chr2 (44-101)||(22596498-22596555)
chr2 (53-102)||(25575325-25575374)
chr2 (53-102)||(34726606-34726655)
chr2 (53-102)||(42364494-42364543)
chr2 (53-102)||(42364686-42364735)
chr2 (53-101)||(44915485-44915533)
[»] scaffold0516 (1 HSPs)
scaffold0516 (45-102)||(1241-1298)
[»] scaffold0249 (1 HSPs)
scaffold0249 (45-102)||(23538-23595)
[»] chr8 (21 HSPs)
chr8 (45-102)||(35448603-35448660)
chr8 (47-102)||(1672924-1672979)
chr8 (45-102)||(15809833-15809890)
chr8 (53-102)||(17656811-17656860)
chr8 (46-102)||(27506701-27506757)
chr8 (53-100)||(17792887-17792934)
chr8 (60-103)||(28979291-28979334)
chr8 (53-92)||(40012201-40012240)
chr8 (60-102)||(10586054-10586096)
chr8 (44-102)||(34343444-34343502)
chr8 (53-91)||(40004720-40004758)
chr8 (53-91)||(42434566-42434604)
chr8 (53-102)||(185883-185932)
chr8 (53-102)||(15808887-15808936)
chr8 (53-102)||(17656620-17656669)
chr8 (53-102)||(23567488-23567537)
chr8 (53-102)||(23567636-23567685)
chr8 (53-102)||(32644049-32644097)
chr8 (59-102)||(5106728-5106769)
chr8 (55-83)||(15227169-15227197)
chr8 (46-102)||(23347714-23347770)
[»] chr1 (21 HSPs)
chr1 (53-102)||(14390037-14390086)
chr1 (44-102)||(10974626-10974684)
chr1 (53-102)||(17893074-17893123)
chr1 (46-103)||(31763965-31764022)
chr1 (53-102)||(33156994-33157043)
chr1 (53-102)||(42134126-42134175)
chr1 (53-101)||(17893267-17893315)
chr1 (58-102)||(45849115-45849159)
chr1 (59-102)||(14389852-14389895)
chr1 (44-102)||(1395344-1395402)
chr1 (53-91)||(19861717-19861755)
chr1 (53-102)||(9041044-9041093)
chr1 (53-102)||(14229174-14229223)
chr1 (53-102)||(14229354-14229403)
chr1 (53-102)||(17811276-17811325)
chr1 (58-99)||(18928785-18928826)
chr1 (53-102)||(18928948-18928997)
chr1 (53-102)||(32595106-32595155)
chr1 (55-83)||(6314255-6314283)
chr1 (53-93)||(9628601-9628641)
chr1 (70-102)||(12796622-12796654)
[»] scaffold0102 (2 HSPs)
scaffold0102 (46-102)||(15571-15627)
scaffold0102 (53-102)||(33618-33667)
[»] scaffold0031 (1 HSPs)
scaffold0031 (46-102)||(80662-80718)
[»] chr3 (14 HSPs)
chr3 (46-102)||(8036795-8036851)
chr3 (46-102)||(50416475-50416531)
chr3 (44-102)||(36185898-36185956)
chr3 (53-102)||(50416557-50416606)
chr3 (46-102)||(19012555-19012611)
chr3 (53-103)||(47924358-47924408)
chr3 (46-83)||(27068539-27068576)
chr3 (53-102)||(27446206-27446255)
chr3 (53-102)||(36185728-36185777)
chr3 (53-102)||(47225841-47225890)
chr3 (55-83)||(8718113-8718141)
chr3 (55-83)||(9070000-9070028)
chr3 (53-101)||(12974014-12974062)
chr3 (58-102)||(47729249-47729293)
[»] scaffold0291 (1 HSPs)
scaffold0291 (43-102)||(9502-9561)
[»] chr5 (20 HSPs)
chr5 (53-103)||(39166153-39166203)
chr5 (53-102)||(11660975-11661024)
chr5 (53-102)||(23155527-23155576)
chr5 (53-102)||(39861773-39861822)
chr5 (46-102)||(11660788-11660844)
chr5 (47-102)||(20134195-20134250)
chr5 (46-101)||(22695534-22695589)
chr5 (53-103)||(15559051-15559101)
chr5 (53-103)||(22671989-22672039)
chr5 (53-91)||(25189824-25189862)
chr5 (53-102)||(3340592-3340641)
chr5 (46-102)||(15059626-15059683)
chr5 (53-102)||(16552249-16552298)
chr5 (53-102)||(20134392-20134441)
chr5 (53-102)||(22830781-22830830)
chr5 (53-102)||(35662069-35662118)
chr5 (53-102)||(39086519-39086568)
chr5 (61-102)||(39861589-39861630)
chr5 (46-102)||(703725-703781)
chr5 (43-83)||(25545569-25545609)
[»] scaffold0129 (1 HSPs)
scaffold0129 (53-102)||(20113-20162)
[»] scaffold0009 (1 HSPs)
scaffold0009 (58-103)||(51912-51957)
[»] chr6 (14 HSPs)
chr6 (53-102)||(22857490-22857539)
chr6 (46-102)||(25119101-25119157)
chr6 (53-91)||(28132783-28132821)
chr6 (53-102)||(19281285-19281334)
chr6 (53-102)||(20522841-20522890)
chr6 (53-102)||(21384982-21385031)
chr6 (53-102)||(22857670-22857719)
chr6 (53-102)||(25119463-25119512)
chr6 (53-93)||(10588955-10588995)
chr6 (53-101)||(14237780-14237828)
chr6 (53-93)||(19284373-19284413)
chr6 (46-102)||(21384784-21384840)
chr6 (53-93)||(30909441-30909481)
chr6 (55-83)||(34399653-34399681)
[»] scaffold0035 (1 HSPs)
scaffold0035 (46-93)||(75687-75734)
[»] scaffold0455 (1 HSPs)
scaffold0455 (53-91)||(10689-10727)
[»] scaffold0221 (1 HSPs)
scaffold0221 (53-91)||(20486-20524)
[»] scaffold0154 (1 HSPs)
scaffold0154 (53-91)||(37483-37521)
[»] scaffold0664 (1 HSPs)
scaffold0664 (50-102)||(3147-3199)


Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 85 - 410
Target Start/End: Original strand, 8402095 - 8402420
Alignment:
Q  85 tgcataaatgcagaaatgaaaagccttatgcaccataaccgcacccgatatgaaatagacaagagtggtgaactgaatagacacacaacgtgaactgagt 184  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8402095 tgcataaatgcagaaatgaaaagcattatgcaccataaccgcacctgatatgaaatagacaagagtggtgaactgaatagacacacaacgtgaaccgagt 8402194  T
Q  185 aatggtgagattcaaattcgacccaggctgctcggtggaagttaacaacatcgatggcggcatatacaccccatggttcaacggcaccatcataagccgc 284  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8402195 aatggtgagattcaaattcgacccaggctgcgcggtggaagttaacaacatcgatggcggcatatacaccccatggttcaacggcaccatcataagccgc 8402294  T
Q  285 gtctcctccaacgaattcttggtcgattacaatgatttggaactggaacaaactgttgtcggaattcaccagatccgaccagtgccatcgcccgtgagtg 384  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8402295 gtctcctccaacgaattcttggttgattacaatgatttggaactggaacaaactgttgtcggaattcaccagatccgaccagtgccatcgccggtgagtg 8402394  T
Q  385 attttgaattaaagatcggcgatgat 410  Q
    ||||||||||||||||||||||||||    
T  8402395 attttgaattaaagatcggcgatgat 8402420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 6841814 - 6841871
Alignment:
Q  44 atggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaat 101  Q
    |||||||| |||| ||||||||||||  |||||||||||||||||||||| |||||||    
T  6841814 atggctgcggttatggtgcataaggaaatccttatgcaccctgcataaattcagaaat 6841871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 1492910 - 1492854
Alignment:
Q  46 ggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||| |||| |||||||||||||||||||||||||| ||||||||| || |||||    
T  1492910 ggctgcggttatggtgcataaggatttccttatgcaccatgcataaattcaaaaatg 1492854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 8165757 - 8165813
Alignment:
Q  46 ggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||| |||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  8165757 ggctgcggttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatg 8165813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 8402043 - 8402094
Alignment:
Q  16 aatatatattttgcgtgtgtagatatgaatggctgctgttacggtgcataag 67  Q
    |||| ||||||||||| ||||||||||||||||||| ||||| |||||||||    
T  8402043 aataaatattttgcgtctgtagatatgaatggctgcggttacagtgcataag 8402094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 33883286 - 33883345
Alignment:
Q  43 aatggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    ||||||||| |||| ||||||||||||  ||||||||||||||| |||||| ||||||||    
T  33883286 aatggctgcggttatggtgcataaggaaatccttatgcaccctgtataaattcagaaatg 33883345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 31763150 - 31763101
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  31763150 gttatggtgcataaggaaatccttatgcaccctgcataaattcagaaatg 31763101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 36309423 - 36309468
Alignment:
Q  58 ggtgcataaggatttccttatgcaccctgcataaatgcagaaatga 103  Q
    ||||||||||||  |||||||||||||||||||||| |||||||||    
T  36309423 ggtgcataaggaaatccttatgcaccctgcataaatccagaaatga 36309468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 43375570 - 43375513
Alignment:
Q  46 ggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatga 103  Q
    |||||| |||| |||||||| |||  |||||||||||||||||||||| |||||||||    
T  43375570 ggctgcggttatggtgcatacggaaatccttatgcaccctgcataaattcagaaatga 43375513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 53865285 - 53865236
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  53865285 gttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatg 53865236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 21995662 - 21995721
Alignment:
Q  43 aatggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    ||||| ||| |||| ||||||||||||  |||||||||||||||||||||| || |||||    
T  21995662 aatgggtgcggttatggtgcataaggaaatccttatgcaccctgcataaatccataaatg 21995721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 29825715 - 29825754
Alignment:
Q  52 tgttacggtgcataaggatttccttatgcaccctgcataa 91  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  29825715 tgttatggtgcataaggatttccttatgcaccgtgcataa 29825754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 55782679 - 55782636
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgca 96  Q
    |||| |||||||||||||||||||||||||| ||||||| ||||    
T  55782679 gttatggtgcataaggatttccttatgcaccgtgcataattgca 55782636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 55846859 - 55846816
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgca 96  Q
    |||| |||||||||||||||||||||||||| ||||||| ||||    
T  55846859 gttatggtgcataaggatttccttatgcaccgtgcataattgca 55846816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 8157331 - 8157281
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatga 103  Q
    |||| ||||||||||||  ||||||||||||||||||||||  ||||||||    
T  8157331 gttatggtgcataaggaaatccttatgcaccctgcataaatctagaaatga 8157281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 9813187 - 9813137
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatga 103  Q
    |||| ||||||||||||  || ||||||||||||||||||| |||||||||    
T  9813187 gttatggtgcataaggaaatctttatgcaccctgcataaattcagaaatga 9813137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 14499253 - 14499291
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataa 91  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  14499253 gttatggtgcataaggatttccttatgcaccgtgcataa 14499291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 17109709 - 17109771
Alignment:
Q  41 tgaatggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatga 103  Q
    |||| |||||| |||| ||||||||||||  |||||||| ||| ||||||||| |||||||||    
T  17109709 tgaaaggctgcggttatggtgcataaggaaatccttatgtaccttgcataaatccagaaatga 17109771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 50070721 - 50070759
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataa 91  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  50070721 gttatggtgcataaggatttccttatgcaccgtgcataa 50070759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 562777 - 562826
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  ||| |||||||||||||||||| ||||||||    
T  562777 gttatggtgcataaggaaatccctatgcaccctgcataaattcagaaatg 562826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 1492674 - 1492723
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  ||||||||||||||||||||||  |||||||    
T  1492674 gttatggtgcataaggaaatccttatgcaccctgcataaatctagaaatg 1492723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 2124346 - 2124395
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||||||||||||||| || |||||    
T  2124346 gttatggtgcataaggaaatccttatgcaccctgcataaattcaaaaatg 2124395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 2124587 - 2124538
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  | |||||||||||||||||||| ||||||||    
T  2124587 gttatggtgcataaggaaattcttatgcaccctgcataaatccagaaatg 2124538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 12722980 - 12722931
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  | |||||||||||||||||||| ||||||||    
T  12722980 gttatggtgcataaggaaattcttatgcaccctgcataaatccagaaatg 12722931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 25715645 - 25715694
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||||||||||||||| || |||||    
T  25715645 gttatggtgcataaggaaatccttatgcaccctgcataaatccaaaaatg 25715694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 25715769 - 25715720
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| |||||||||| |  |||||||||||||||||||||| ||||||||    
T  25715769 gttatggtgcataagaaaatccttatgcaccctgcataaatccagaaatg 25715720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 31762931 - 31762980
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||| ||||||||||| ||||||||    
T  31762931 gttatggtgcataaggaaatccttatgcatcctgcataaattcagaaatg 31762980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 37059713 - 37059762
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||||| ||||||||| ||||||||    
T  37059713 gttatggtgcataaggaaatccttatgcaccttgcataaatccagaaatg 37059762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 43374449 - 43374498
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||| ||||||||||||| ||||||||    
T  43374449 gttatggtgcataaggaaatccttatgtaccctgcataaatccagaaatg 43374498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 54895406 - 54895455
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| |||||||||| |  |||||||||||||||||||||| ||||||||    
T  54895406 gttatggtgcataagaaaatccttatgcaccctgcataaatccagaaatg 54895455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 54895625 - 54895576
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||||||||||||||| || |||||    
T  54895625 gttatggtgcataaggaaatccttatgcaccctgcataaatccaaaaatg 54895576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 9967689 - 9967732
Alignment:
Q  58 ggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||||||||| | ||||||||||||||||||||| ||||||||    
T  9967689 ggtgcataaggaat-ccttatgcaccctgcataaattcagaaatg 9967732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 17109960 - 17109920
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaat 93  Q
    |||| ||||||||||||  ||||||||||||||||||||||    
T  17109960 gttatggtgcataaggaaatccttatgcaccctgcataaat 17109920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 30779338 - 30779394
Alignment:
Q  46 ggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||| |||| ||||||||||||  |||||||||||| ||||||||| || |||||    
T  30779338 ggctgcggttatggtgcataaggaaatccttatgcaccttgcataaatccataaatg 30779394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 33819693 - 33819733
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaat 93  Q
    |||| ||||||||||||  ||||||||||||||||||||||    
T  33819693 gttatggtgcataaggaaatccttatgcaccctgcataaat 33819733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 36924243 - 36924283
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaat 93  Q
    |||| ||||||||||||  ||||||||||||||||||||||    
T  36924243 gttatggtgcataaggaaatccttatgcaccctgcataaat 36924283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 38010752 - 38010704
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaat 101  Q
    |||| |||||||| |||  |||||||||||||||||||||| |||||||    
T  38010752 gttatggtgcatacggaaatccttatgcaccctgcataaattcagaaat 38010704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 169 - 406
Target Start/End: Original strand, 5475297 - 5475534
Alignment:
Q  169 acaacgtgaactgagtaatggtgagattcaaattcgacccaggctgctcggtggaagttaacaacatcgatggcggcatatacaccccatggttcaacgg 268  Q
    |||||||||||  ||||||||| |||||||| |||||||| |||||| | |||||| ||| ||||  ||||||| |||||||    |||||||||| |||    
T  5475297 acaacgtgaacatagtaatggtaagattcaagttcgacccgggctgccctgtggaaattagcaactacgatggcagcatatatgaaccatggttcaccgg 5475396  T
Q  269 caccatcataagccgcgtctcctccaacgaattcttggtcgattacaatgatttggaactggaacaaactgttgtcggaattcaccagatccgaccagtg 368  Q
    ||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5475397 caccatcatcagctgcgtctcctccaacgaattcttggttgattacaatgatttggaactggaacaaactgttgtcagaattcaccagatccgaccagtg 5475496  T
Q  369 ccatcgcccgtgagtgattttgaattaaagatcggcga 406  Q
    || | ||| ||| |||||||||||||||||||||||||    
T  5475497 ccgttgcctgtgggtgattttgaattaaagatcggcga 5475534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 6846581 - 6846630
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| |||||||||||||||||||||||||  ||||||||| ||||||||    
T  6846581 gttatggtgcataaggatttccttatgcactttgcataaattcagaaatg 6846630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 44426600 - 44426649
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  44426600 gttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatg 44426649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 46004577 - 46004528
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  46004577 gttatggtgcataaggaaatccttatgcaccctgcataaattcagaaatg 46004528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 26945756 - 26945708
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaat 101  Q
    |||| ||||||||||||  |||||||||||||||||||||| |||||||    
T  26945756 gttatggtgcataaggaaatccttatgcaccctgcataaatccagaaat 26945708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 43742251 - 43742301
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatga 103  Q
    |||| ||||||||||||  |||||||||| ||||||||||| |||||||||    
T  43742251 gttatggtgcataaggaaatccttatgcatcctgcataaatccagaaatga 43742301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 91
Target Start/End: Complemental strand, 25779741 - 25779708
Alignment:
Q  58 ggtgcataaggatttccttatgcaccctgcataa 91  Q
    |||||||||||||||||||||||||| |||||||    
T  25779741 ggtgcataaggatttccttatgcaccgtgcataa 25779708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 34227678 - 34227727
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||| ||||||||||| ||||||||    
T  34227678 gttatggtgcataaggaaatccttatgcaacctgcataaatccagaaatg 34227727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 44426841 - 44426792
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  || ||||||||||||||||||| ||||||||    
T  44426841 gttatggtgcataaggaaatctttatgcaccctgcataaatccagaaatg 44426792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 5728929 - 5728873
Alignment:
Q  46 ggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||| |||| |||||||||| |  | |||||||||||||||||||| ||||||||    
T  5728929 ggctgcggttatggtgcataagaaaattcttatgcaccctgcataaatccagaaatg 5728873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 83
Target Start/End: Original strand, 33798742 - 33798770
Alignment:
Q  55 tacggtgcataaggatttccttatgcacc 83  Q
    |||||||||||||||||||||||||||||    
T  33798742 tacggtgcataaggatttccttatgcacc 33798770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 38837547 - 38837591
Alignment:
Q  58 ggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||||| |||  |||||||||||||||||||||| ||||||||    
T  38837547 ggtgcatacggaaatccttatgcaccctgcataaattcagaaatg 38837591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 22588313 - 22588369
Alignment:
Q  46 ggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  22588313 ggctgcggttatggtgcataaggatttccttatgcaccctgcataaattcagaaatg 22588369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 19246914 - 19246854
Alignment:
Q  43 aatggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatga 103  Q
    ||||||||| |||| ||||||||||||||||||||| |||||| ||||||| |||||||||    
T  19246914 aatggctgcggttatggtgcataaggatttccttatacaccctacataaattcagaaatga 19246854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 37867397 - 37867348
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||||||    
T  37867397 gttacggtgcataaggaaatccttatgcaccctgcataaattcagaaatg 37867348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 31783786 - 31783844
Alignment:
Q  44 atggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||| |||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  31783786 atgggtgcggttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatg 31783844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 12449049 - 12449105
Alignment:
Q  46 ggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||| |||| ||||||||||||  ||||||||||| |||||||||| ||||||||    
T  12449049 ggctgcggttatggtgcataaggaaatccttatgcacactgcataaattcagaaatg 12449105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 19246664 - 19246712
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaat 101  Q
    |||| ||||||||||||  |||||||||||||||||||||| |||||||    
T  19246664 gttatggtgcataaggaaatccttatgcaccctgcataaattcagaaat 19246712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 15252847 - 15252890
Alignment:
Q  59 gtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||||||||  |||||||||||||||||||||| ||||||||    
T  15252847 gtgcataaggaaatccttatgcaccctgcataaatccagaaatg 15252890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 34726847 - 34726788
Alignment:
Q  44 atggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatga 103  Q
    |||| ||| |||| ||||||||||||  | |||||||||||||||||||| |||||||||    
T  34726847 atgggtgcggttatggtgcataaggaaattcttatgcaccctgcataaatccagaaatga 34726788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 22596298 - 22596352
Alignment:
Q  45 tggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaa 99  Q
    ||||||| |||| |||| |||||||  |||||||||||||||||||||| |||||    
T  22596298 tggctgcggttatggtgtataaggaaatccttatgcaccctgcataaatccagaa 22596352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 24183639 - 24183589
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatga 103  Q
    |||| ||||||||||||  |||||||||||||||||||||| ||| |||||    
T  24183639 gttatggtgcataaggaaatccttatgcaccctgcataaattcaggaatga 24183589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 31711503 - 31711561
Alignment:
Q  44 atggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||| |||| ||||||||||||  |||||||| ||||||||||||| ||||||||    
T  31711503 atgggtgcggttatggtgcataaggaaatccttatgtaccctgcataaatccagaaatg 31711561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 37867156 - 37867206
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatga 103  Q
    |||| ||||||||||||  ||||||| |||||||||||||| |||||||||    
T  37867156 gttatggtgcataaggaaatccttatccaccctgcataaattcagaaatga 37867206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 20661393 - 20661438
Alignment:
Q  48 ctgctgttacggtgcataaggatttccttatgcaccctgcataaat 93  Q
    |||| |||| ||||||||||||  ||||||||||||||||||||||    
T  20661393 ctgcggttatggtgcataaggaaatccttatgcaccctgcataaat 20661438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 20661637 - 20661588
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  || ||||||||||||||||||| ||||||||    
T  20661637 gttatggtgcataaggaaatcattatgcaccctgcataaatccagaaatg 20661588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 22596555 - 22596498
Alignment:
Q  44 atggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaat 101  Q
    |||| ||| |||| ||||||||||||  |||||||| ||||||||||||| |||||||    
T  22596555 atgggtgcggttatggtgcataaggaaatccttatgtaccctgcataaatccagaaat 22596498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 25575325 - 25575374
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||| ||||||||||| ||||||||    
T  25575325 gttatggtgcataaggaaatccttatgcatcctgcataaattcagaaatg 25575374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 34726606 - 34726655
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||||||||||||||| || |||||    
T  34726606 gttatggtgcataaggaaatccttatgcaccctgcataaatccataaatg 34726655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 42364494 - 42364543
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| |||||||||| |  |||||||||||||||||||||| ||||||||    
T  42364494 gttatggtgcataagaaaatccttatgcaccctgcataaattcagaaatg 42364543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 42364735 - 42364686
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| |||||| |||||  |||||||||||||||||||||| ||||||||    
T  42364735 gttatggtgcaaaaggaaatccttatgcaccctgcataaatccagaaatg 42364686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 44915533 - 44915485
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaat 101  Q
    |||| ||||||||||||  | |||||||||||||||||||| |||||||    
T  44915533 gttatggtgcataaggaaatgcttatgcaccctgcataaatccagaaat 44915485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 1298 - 1241
Alignment:
Q  45 tggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    ||||||| |||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  1298 tggctgcggttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatg 1241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 23538 - 23595
Alignment:
Q  45 tggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    ||||||| |||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  23538 tggctgcggttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatg 23595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 35448660 - 35448603
Alignment:
Q  45 tggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    ||||||| |||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  35448660 tggctgcggttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatg 35448603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 1672979 - 1672924
Alignment:
Q  47 gctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    ||||| |||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  1672979 gctgccgttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatg 1672924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 15809890 - 15809833
Alignment:
Q  45 tggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    ||||||| |||| ||||||||||||  |||||||||||||| ||||||| ||||||||    
T  15809890 tggctgcggttatggtgcataaggaaatccttatgcaccctccataaattcagaaatg 15809833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 17656860 - 17656811
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||| ||| |||||||||||||||||||| ||||||||    
T  17656860 gttatggtgcataaggtttttcttatgcaccctgcataaatccagaaatg 17656811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 27506701 - 27506757
Alignment:
Q  46 ggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||| |||| ||||||||||||  |||||||||||||||||||||| || |||||    
T  27506701 ggctgcagttatggtgcataaggaaatccttatgcaccctgcataaatccaaaaatg 27506757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 17792934 - 17792887
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaa 100  Q
    |||| ||||||||||||  |||||||||||||||||||||| ||||||    
T  17792934 gttatggtgcataaggaaatccttatgcaccctgcataaatccagaaa 17792887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 28979291 - 28979334
Alignment:
Q  60 tgcataaggatttccttatgcaccctgcataaatgcagaaatga 103  Q
    ||||||||||  |||||||||||||||||||||| |||||||||    
T  28979291 tgcataaggaaatccttatgcaccctgcataaatccagaaatga 28979334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 40012240 - 40012201
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaa 92  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  40012240 gttatggtgcataaggatttccttatgcaccatgcataaa 40012201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 10586096 - 10586054
Alignment:
Q  60 tgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    ||||||||||  |||||||||||||||||||||| ||||||||    
T  10586096 tgcataaggaaatccttatgcaccctgcataaattcagaaatg 10586054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 34343502 - 34343444
Alignment:
Q  44 atggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||||| |||| ||||||||||||  |  ||||||||||||||||||| ||||||||    
T  34343502 atggctgcggttatggtgcataaggaaattattatgcaccctgcataaattcagaaatg 34343444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 40004720 - 40004758
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataa 91  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  40004720 gttatggtgcataaggatttccttatgcaccgtgcataa 40004758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 42434604 - 42434566
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataa 91  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  42434604 gttatggtgcataaggatttccttatgcaccgtgcataa 42434566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 185883 - 185932
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  ||||||||||| |||||||||| ||||||||    
T  185883 gttatggtgcataaggaaatccttatgcactctgcataaattcagaaatg 185932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 15808887 - 15808936
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| |||||||||| |  |||||||||||||||||||||| ||||||||    
T  15808887 gttatggtgcataagaaaatccttatgcaccctgcataaatccagaaatg 15808936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 17656620 - 17656669
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  ||||||||||| |||||||||| ||||||||    
T  17656620 gttatggtgcataaggaaatccttatgcactctgcataaatccagaaatg 17656669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 23567488 - 23567537
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  ||||||||||| |||||||||| ||||||||    
T  23567488 gttatggtgcataaggaaatccttatgcactctgcataaatccagaaatg 23567537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 23567685 - 23567636
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  | |||||||||||||||||||| ||||||||    
T  23567685 gttatggtgcataaggaaattcttatgcaccctgcataaatccagaaatg 23567636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 32644049 - 32644097
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| |||||||||||| | ||||||||||||||||||||| ||||||||    
T  32644049 gttatggtgcataaggaat-ccttatgcaccctgcataaatccagaaatg 32644097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 5106769 - 5106728
Alignment:
Q  59 gtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    ||||||||||||  ||||||||||||||||||||| ||||||||    
T  5106769 gtgcataaggat--ccttatgcaccctgcataaatccagaaatg 5106728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 83
Target Start/End: Original strand, 15227169 - 15227197
Alignment:
Q  55 tacggtgcataaggatttccttatgcacc 83  Q
    |||||||||||||||||||||||||||||    
T  15227169 tacggtgcataaggatttccttatgcacc 15227197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 23347770 - 23347714
Alignment:
Q  46 ggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||| |||| |||||||||| |  |||||||| ||||||||||||| ||||||||    
T  23347770 ggctgcggttatggtgcataagaaaatccttatgaaccctgcataaatccagaaatg 23347714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 14390086 - 14390037
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||||||||||||||||||||||||||  |||||||    
T  14390086 gttatggtgcataaggatttccttatgcaccctgcataaatttagaaatg 14390037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 10974626 - 10974684
Alignment:
Q  44 atggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||||| |||| ||||||||||||  |||||||||||||||||||||| || |||||    
T  10974626 atggctgcggttatggtgcataaggaaatccttatgcaccctgcataaattcaaaaatg 10974684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 17893074 - 17893123
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  17893074 gttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatg 17893123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 31764022 - 31763965
Alignment:
Q  46 ggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatga 103  Q
    |||||| |||| ||||||||||||  |||||||||||||| ||||||| |||||||||    
T  31764022 ggctgcggttatggtgcataaggaaatccttatgcaccctacataaatccagaaatga 31763965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 33156994 - 33157043
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  33156994 gttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatg 33157043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 42134175 - 42134126
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  42134175 gttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatg 42134126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 17893315 - 17893267
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaat 101  Q
    |||| ||||||||||||  |||||||||||||||||||||| |||||||    
T  17893315 gttatggtgcataaggaaatccttatgcaccctgcataaattcagaaat 17893267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 45849115 - 45849159
Alignment:
Q  58 ggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||    
T  45849115 ggtgcataaggaaatccttatgcaccctgcataaatccagaaatg 45849159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 14389852 - 14389895
Alignment:
Q  59 gtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||||||||  |||||||||||||||||||||| ||||||||    
T  14389852 gtgcataaggaaatccttatgcaccctgcataaatccagaaatg 14389895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 1395402 - 1395344
Alignment:
Q  44 atggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||| |||| ||||||||||||  |||||||||||| ||||||||| ||||||||    
T  1395402 atggttgcggttatggtgcataaggaaatccttatgcaccatgcataaattcagaaatg 1395344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 19861755 - 19861717
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataa 91  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  19861755 gttatggtgcataaggatttccttatgcaccgtgcataa 19861717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 9041093 - 9041044
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||||||||||||| | ||||||||    
T  9041093 gttatggtgcataaggaaatccttatgcaccctgcataatttcagaaatg 9041044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 14229174 - 14229223
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||||||||||||||| || |||||    
T  14229174 gttatggtgcataaggaaatccttatgcaccctgcataaattcaaaaatg 14229223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 14229403 - 14229354
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  || ||||||||||||||||||| ||||||||    
T  14229403 gttatggtgcataaggaaatctttatgcaccctgcataaatccagaaatg 14229354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 17811325 - 17811276
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  ||||||||||||||| |||||| ||||||||    
T  17811325 gttatggtgcataaggaaatccttatgcaccctgtataaattcagaaatg 17811276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 18928785 - 18928826
Alignment:
Q  58 ggtgcataaggatttccttatgcaccctgcataaatgcagaa 99  Q
    ||||||||||||  |||||||||||||||||||||| |||||    
T  18928785 ggtgcataaggaaatccttatgcaccctgcataaatccagaa 18928826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 18928997 - 18928948
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  || ||||||||||||||||||| ||||||||    
T  18928997 gttatggtgcataaggaaatctttatgcaccctgcataaatccagaaatg 18928948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 32595106 - 32595155
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  | |||||||||||||||||||| ||||||||    
T  32595106 gttatggtgcataaggaaattcttatgcaccctgcataaatccagaaatg 32595155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 83
Target Start/End: Original strand, 6314255 - 6314283
Alignment:
Q  55 tacggtgcataaggatttccttatgcacc 83  Q
    |||||||||||||||||||||||||||||    
T  6314255 tacggtgcataaggatttccttatgcacc 6314283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 9628641 - 9628601
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaat 93  Q
    |||| ||||||||||||  ||||||||||||||||||||||    
T  9628641 gttatggtgcataaggaaatccttatgcaccctgcataaat 9628601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 12796654 - 12796622
Alignment:
Q  70 tttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||||||||||||||||||||| ||||||||    
T  12796654 tttccttatgcaccctgcataaatccagaaatg 12796622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 15571 - 15627
Alignment:
Q  46 ggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||| |||| ||||||||||||||| ||||||||| |||||||||| ||||||||    
T  15571 ggctgcggttatggtgcataaggattttcttatgcactctgcataaatccagaaatg 15627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 33618 - 33667
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  ||||||||||||||||||||||  |||||||    
T  33618 gttatggtgcataaggaaatccttatgcaccctgcataaatctagaaatg 33667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 80662 - 80718
Alignment:
Q  46 ggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||| |||| |||| |||||||||||||||||||||| |||||||| ||||||||    
T  80662 ggctgcggttatggtgtataaggatttccttatgcaccccgcataaatccagaaatg 80718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 8036795 - 8036851
Alignment:
Q  46 ggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||| |||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  8036795 ggctgcggttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatg 8036851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 50416475 - 50416531
Alignment:
Q  46 ggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||| |||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  50416475 ggctgcggttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatg 50416531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 36185956 - 36185898
Alignment:
Q  44 atggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||| |||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  36185956 atgggtgcggttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatg 36185898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 50416606 - 50416557
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  50416606 gttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatg 50416557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 19012611 - 19012555
Alignment:
Q  46 ggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||| |||| ||||||||||||  | |||||||||||||||||||| ||||||||    
T  19012611 ggctgcggttatggtgcataaggaaattcttatgcaccctgcataaatccagaaatg 19012555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 47924408 - 47924358
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatga 103  Q
    |||| ||||||||||||  ||||||||||||||||||||||  ||||||||    
T  47924408 gttatggtgcataaggaaatccttatgcaccctgcataaatcaagaaatga 47924358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 27068576 - 27068539
Alignment:
Q  46 ggctgctgttacggtgcataaggatttccttatgcacc 83  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  27068576 ggctgcggttatggtgcataaggatttccttatgcacc 27068539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 27446255 - 27446206
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||||| ||||||||| ||||||||    
T  27446255 gttatggtgcataaggaaatccttatgcaccttgcataaattcagaaatg 27446206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 36185728 - 36185777
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||| ||||||||||| ||||||||    
T  36185728 gttatggtgcataaggaaatccttatgcatcctgcataaatccagaaatg 36185777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 47225890 - 47225841
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||| ||||||||||||| ||||||||    
T  47225890 gttatggtgcataaggaaatccttatgtaccctgcataaatccagaaatg 47225841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 83
Target Start/End: Complemental strand, 8718141 - 8718113
Alignment:
Q  55 tacggtgcataaggatttccttatgcacc 83  Q
    |||||||||||||||||||||||||||||    
T  8718141 tacggtgcataaggatttccttatgcacc 8718113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 83
Target Start/End: Complemental strand, 9070028 - 9070000
Alignment:
Q  55 tacggtgcataaggatttccttatgcacc 83  Q
    |||||||||||||||||||||||||||||    
T  9070028 tacggtgcataaggatttccttatgcacc 9070000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 12974014 - 12974062
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaat 101  Q
    |||| ||||||||||||  |||||||||||||||| ||||| |||||||    
T  12974014 gttatggtgcataaggaaatccttatgcaccctgcctaaatccagaaat 12974062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 47729293 - 47729249
Alignment:
Q  58 ggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    ||||||||||||  |||||||||||||| ||||||| ||||||||    
T  47729293 ggtgcataaggaaatccttatgcaccctacataaattcagaaatg 47729249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 9502 - 9561
Alignment:
Q  43 aatggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    ||||||| | |||| | ||||||||||||||||||||||| |||||||||| ||||||||    
T  9502 aatggctacggttatgttgcataaggatttccttatgcactctgcataaattcagaaatg 9561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 39166153 - 39166203
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatga 103  Q
    |||||||||||||||||  | |||||||||||||||||||| |||||||||    
T  39166153 gttacggtgcataaggaaattcttatgcaccctgcataaatccagaaatga 39166203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 11661024 - 11660975
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  11661024 gttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatg 11660975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 23155527 - 23155576
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  23155527 gttatggtgcataaggaaatccttatgcaccctgcataaattcagaaatg 23155576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 39861822 - 39861773
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  39861822 gttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatg 39861773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 11660788 - 11660844
Alignment:
Q  46 ggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||| |||| ||||||||||||  |||||||||||||| ||||||| ||||||||    
T  11660788 ggctgcggttatggtgcataaggaaatccttatgcaccctacataaattcagaaatg 11660844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 20134195 - 20134250
Alignment:
Q  47 gctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    ||||| |||| ||||||||||||  |||||||||| ||||||||||| ||||||||    
T  20134195 gctgcggttatggtgcataaggaaatccttatgcagcctgcataaatccagaaatg 20134250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 22695589 - 22695534
Alignment:
Q  46 ggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaat 101  Q
    |||||| |||| ||||||||||||  |||||||||||| ||||||||| |||||||    
T  22695589 ggctgcggttatggtgcataaggaaatccttatgcaccttgcataaatccagaaat 22695534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 15559051 - 15559101
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatga 103  Q
    |||| ||||||||||||  |||||||||||| ||||||||| |||||||||    
T  15559051 gttatggtgcataaggaaatccttatgcaccatgcataaattcagaaatga 15559101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 22672039 - 22671989
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatga 103  Q
    |||| ||||||||||||  |||||||||| ||||||||||| |||||||||    
T  22672039 gttatggtgcataaggaaatccttatgcatcctgcataaatccagaaatga 22671989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 25189824 - 25189862
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataa 91  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  25189824 gttatggtgcataaggatttccttatgcaccgtgcataa 25189862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 3340592 - 3340641
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  ||||||||||||||||||||||  |||||||    
T  3340592 gttatggtgcataaggaaatccttatgcaccctgcataaatttagaaatg 3340641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 15059683 - 15059626
Alignment:
Q  46 ggctgctgttacggtgcataaggatttcc-ttatgcaccctgcataaatgcagaaatg 102  Q
    |||||| |||| ||||||||||||  ||| ||||||||||||||||||| ||||||||    
T  15059683 ggctgcggttatggtgcataaggaaatcccttatgcaccctgcataaatccagaaatg 15059626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 16552249 - 16552298
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  ||| |||||||||||||||||| ||||||||    
T  16552249 gttatggtgcataaggaaatccgtatgcaccctgcataaattcagaaatg 16552298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 20134441 - 20134392
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  ||||||||||| |||||||||| ||||||||    
T  20134441 gttatggtgcataaggaaatccttatgcactctgcataaatccagaaatg 20134392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 22830830 - 22830781
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  ||||||||||| |||||||||| ||||||||    
T  22830830 gttatggtgcataaggaaatccttatgcacactgcataaatccagaaatg 22830781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 35662069 - 35662118
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||||||| ||||||| ||||||||    
T  35662069 gttatggtgcataaggaaatccttatgcaccctacataaatccagaaatg 35662118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 39086519 - 39086568
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| |||||||||| |  |||||||||||||||||||||| ||||||||    
T  39086519 gttatggtgcataagaaaatccttatgcaccctgcataaattcagaaatg 39086568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 39861589 - 39861630
Alignment:
Q  61 gcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||||||  |||||||||||||||||||||| ||||||||    
T  39861589 gcataaggaaatccttatgcaccctgcataaatccagaaatg 39861630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 703725 - 703781
Alignment:
Q  46 ggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||| |||| ||||||||||||  |||||||||| |||||||||||  |||||||    
T  703725 ggctgcagttatggtgcataaggaaatccttatgcatcctgcataaatttagaaatg 703781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 25545569 - 25545609
Alignment:
Q  43 aatggctgctgttacggtgcataaggatttccttatgcacc 83  Q
    ||||| ||| |||| ||||||||||||||||||||||||||    
T  25545569 aatgggtgcggttatggtgcataaggatttccttatgcacc 25545609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 20162 - 20113
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  20162 gttatggtgcataaggaaatccttatgcaccctgcataaattcagaaatg 20113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 51912 - 51957
Alignment:
Q  58 ggtgcataaggatttccttatgcaccctgcataaatgcagaaatga 103  Q
    ||||||||||||  |||||||||||||||||||||| |||||||||    
T  51912 ggtgcataaggaaatccttatgcaccctgcataaatccagaaatga 51957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 22857490 - 22857539
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  22857490 gttatggtgcataaggaaatccttatgcaccctgcataaattcagaaatg 22857539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 25119101 - 25119157
Alignment:
Q  46 ggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||| |||| ||||||||||||  | |||||||||||||||||||| ||||||||    
T  25119101 ggctgcggttatggtgcataaggaaattcttatgcaccctgcataaattcagaaatg 25119157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 28132821 - 28132783
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataa 91  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  28132821 gttatggtgcataaggatttccttatgcaccgtgcataa 28132783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 19281285 - 19281334
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  ||||| |||||||||||||||| ||||||||    
T  19281285 gttatggtgcataaggaaatccttgtgcaccctgcataaattcagaaatg 19281334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 20522890 - 20522841
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||||||| ||||||| ||||||||    
T  20522890 gttatggtgcataaggaaatccttatgcaccctacataaattcagaaatg 20522841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 21385031 - 21384982
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  ||||||||||||||||||||||  |||||||    
T  21385031 gttatggtgcataaggaaatccttatgcaccctgcataaatctagaaatg 21384982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 22857719 - 22857670
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| |||||||||| |  |||||||||||||||||||||| ||||||||    
T  22857719 gttatggtgcataagaaaatccttatgcaccctgcataaatccagaaatg 22857670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 25119512 - 25119463
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||| ||||||||||||  |||||||||| ||||||||||| ||||||||    
T  25119512 gttatggtgcataaggaaatccttatgcagcctgcataaatccagaaatg 25119463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 10588995 - 10588955
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaat 93  Q
    |||| ||||||||||||  ||||||||||||||||||||||    
T  10588995 gttatggtgcataaggaaatccttatgcaccctgcataaat 10588955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 14237780 - 14237828
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaatgcagaaat 101  Q
    |||| ||||||||||||  |||||||||||||| ||||||| |||||||    
T  14237780 gttatggtgcataaggaaatccttatgcaccctacataaatccagaaat 14237828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 19284373 - 19284413
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaat 93  Q
    |||| ||||||||||||  ||||||||||||||||||||||    
T  19284373 gttatggtgcataaggaaatccttatgcaccctgcataaat 19284413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 21384784 - 21384840
Alignment:
Q  46 ggctgctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||| |||| ||||||||||||  | |||||||| ||||||||||| ||||||||    
T  21384784 ggctgcggttatggtgcataaggaaattcttatgcatcctgcataaatccagaaatg 21384840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 30909481 - 30909441
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataaat 93  Q
    |||| |||||||||||| ||||||||||||| |||||||||    
T  30909481 gttatggtgcataaggaattccttatgcaccgtgcataaat 30909441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 83
Target Start/End: Complemental strand, 34399681 - 34399653
Alignment:
Q  55 tacggtgcataaggatttccttatgcacc 83  Q
    |||||||||||||||||||||||||||||    
T  34399681 tacggtgcataaggatttccttatgcacc 34399653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 75687 - 75734
Alignment:
Q  46 ggctgctgttacggtgcataaggatttccttatgcaccctgcataaat 93  Q
    |||||| |||| |||||| ||||||||| |||||||||||||||||||    
T  75687 ggctgcagttatggtgcacaaggatttctttatgcaccctgcataaat 75734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 10727 - 10689
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataa 91  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  10727 gttatggtgcataaggatttccttatgcaccgtgcataa 10689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 20486 - 20524
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataa 91  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  20486 gttatggtgcataaggatttccttatgcaccgtgcataa 20524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 37521 - 37483
Alignment:
Q  53 gttacggtgcataaggatttccttatgcaccctgcataa 91  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  37521 gttatggtgcataaggatttccttatgcaccgtgcataa 37483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 3199 - 3147
Alignment:
Q  50 gctgttacggtgcataaggatttccttatgcaccctgcataaatgcagaaatg 102  Q
    |||||||  |||||||||||  || ||||||||||||||||||| ||||||||    
T  3199 gctgttatcgtgcataaggaaatctttatgcaccctgcataaatccagaaatg 3147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University