View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4426_low_11 (Length: 422)
Name: NF4426_low_11
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 12121385 - 12121028
Alignment:
| Q |
1 |
tgtgtgatgatttagtagtttttgttgatgtgcacaattttcatttcctcattatcacaagagttactgcaactattctgttgcaagtaaagttttgata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12121385 |
tgtgtgatgatttagtagtttttgttgatgtgcacaattttcatttcctcattatcacaagagttactgcaactattctgttgcaagtaaagttttgata |
12121286 |
T |
|
| Q |
101 |
gatatccttacctttagtctgcttcatctatatgtgttaccattcatttatctgcgtttctctgtgcacttgtgaaactaaccttcaatgctattaatta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12121285 |
gatatccttacctttagtctgcttcatctttatgtgttaccattcatttatctgcgtttctctgtgcacttgtgaaactaaccttcaatgctattaatta |
12121186 |
T |
|
| Q |
201 |
atcaaggattcaagattctttatattgtcattccatttcatgac--------tctcagttatcttttgatgaccatttgagtagtttttgcctgatatgt |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12121185 |
atcaaggattcaagattctttatattgtcattccatttcatggccatcagtttctcagttatcttttgatgaccatttgagtagtttttgcctgatgtgt |
12121086 |
T |
|
| Q |
293 |
gattgttgtttggctaagtctataccatgtgcgagcaaacgatatatcgtaccagggg |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12121085 |
gattgttgtttggctaagtctataccatgtgcgagcaaacgatatatcgtaccagggg |
12121028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 387
Target Start/End: Complemental strand, 12121011 - 12120972
Alignment:
| Q |
348 |
gggagcatggttttaacctcctccttccaatccttgtatg |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12121011 |
gggagcatggttttaacctcctccttccaatccttgtatg |
12120972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 104 - 227
Target Start/End: Original strand, 14661916 - 14662038
Alignment:
| Q |
104 |
atccttacctttagtctgcttcatctatatgtgttaccattcatttatctgcgtttctctgtgcacttgtgaa---actaaccttcaatgctattaatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||| |||||||||| |||| ||||| | |||| | |||| ||||||| |||| |||| |
|
|
| T |
14661916 |
atccttacctttagtctgcttcatctat--gtgttatgattaatttatctgcaattctgtgtgc--tgatgaagttattaacattcaatgttattcatta |
14662011 |
T |
|
| Q |
201 |
atcaaggattcaagattctttatattg |
227 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
14662012 |
atcaaggattcaagattatttatattg |
14662038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 14690993 - 14690895
Alignment:
| Q |
6 |
gatgatttagtagtttttgttgatgtgcacaattttcatttcctcattatcacaagagttactgcaactattctgttgcaagtaaagttttgatagata |
104 |
Q |
| |
|
|||||| | |||| ||| ||||| |||||||||||||||| ||||| |||| |||||||||||||||| ||| || ||||| ||||| | ||||||| |
|
|
| T |
14690993 |
gatgatatggtagctttggttgaaatgcacaattttcattttctcatgatcataagagttactgcaactgttccatttcaagtcaagttcttatagata |
14690895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University