View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_low_14 (Length: 402)
Name: NF4426_low_14
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_low_14 |
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| [»] scaffold0449 (3 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 12129 - 11982
Alignment:
| Q |
9 |
agcacagagcaattaggtgttattatgtggaggtactnnnnnnntagtagtaatcaaattttgatggcccttattttgaggacattatattaaggatttt |
108 |
Q |
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| T |
12129 |
agcacagagcaattaggtgttattatgtggaggtactaaaaaaatagtagtaatcaaattttgatggcccttattttgaggacattatattaaggatttt |
12030 |
T |
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| Q |
109 |
gttgcacttacacaggatcttcctgatagtgttaaagaatttttgtta |
156 |
Q |
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| T |
12029 |
gttgcacttacacaggatcttcctgatagtgttaaagaatttttgtta |
11982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0449; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 260 - 402
Target Start/End: Complemental strand, 11850 - 11704
Alignment:
| Q |
260 |
gggaaactaagattactcaatacagagag----tctatgtatatgtatcttgcaaatccatcatatgcatatgcacacaagaatgagtattgccatgttt |
355 |
Q |
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| T |
11850 |
gggaaactaagattactcaatacagagagagagtctatgtatatgtatcttgcaggtccgtcatatgcatatgcacacaagaatgagtattgccatgttt |
11751 |
T |
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| Q |
356 |
caagttatttgggcgattacctttcctaggccctcgtccttgtcaac |
402 |
Q |
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| T |
11750 |
caagttatttgggcgattacctttcctagtccctcatccttgtcaac |
11704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0449; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 11959 - 11903
Alignment:
| Q |
151 |
ttgttatttgaattgtaatgttgtaacagttaattttattatgaaaacaatgtcaag |
207 |
Q |
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| T |
11959 |
ttgttatttgaattgtaatgttgtaacagttaattttattatgaaaacaatgtcaag |
11903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 43050076 - 43050223
Alignment:
| Q |
9 |
agcacagagcaattaggtgttattatgtggaggtactnnnnnnntagtagtaatcaaattttgatggcccttattttgaggacattatattaaggatttt |
108 |
Q |
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| T |
43050076 |
agcacagagcaattaggtgttattatgtggaggtactaaaaaaatagtagaaatcaaattttgatggcccttattttgaggacattatattaaggatttt |
43050175 |
T |
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| Q |
109 |
gttgcacttacacaggatcttcctgatagtgttaaagaatttttgtta |
156 |
Q |
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| T |
43050176 |
gttgcacttacacaggatcttcctgatagtgttaaagaatttttgtta |
43050223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 260 - 402
Target Start/End: Original strand, 43050355 - 43050501
Alignment:
| Q |
260 |
gggaaactaagattactcaatacagag----agtctatgtatatgtatcttgcaaatccatcatatgcatatgcacacaagaatgagtattgccatgttt |
355 |
Q |
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| T |
43050355 |
gggaaactaagattactcaatacagagagagagtctatgtatatgtatcttgcaggtccgtcatatgcatatgcacacaagaatgagtattgccatgttt |
43050454 |
T |
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| Q |
356 |
caagttatttgggcgattacctttcctaggccctcgtccttgtcaac |
402 |
Q |
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| T |
43050455 |
caagttatttgggcgattacctttcctagaccctcatccttgtcaac |
43050501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 43050246 - 43050302
Alignment:
| Q |
151 |
ttgttatttgaattgtaatgttgtaacagttaattttattatgaaaacaatgtcaag |
207 |
Q |
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| T |
43050246 |
ttgttatttgaattgtaatgttgtaacagttaattttattatgaaaacaatgtcaag |
43050302 |
T |
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