View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_low_18 (Length: 358)
Name: NF4426_low_18
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 6e-65; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 101 - 255
Target Start/End: Original strand, 39158831 - 39158987
Alignment:
| Q |
101 |
aagcaacacaaatagagcgactcattcccttacacaacaatgaaat--gtaaggcatctttgaatatggttgctcttctattgcattcaccatttttaat |
198 |
Q |
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| T |
39158831 |
aagcaacacaaatagagcgactcattcccttacacaacaatgaaatatgtaaggcttctttgaatatggttgctcttctattgcattcaccatttttaat |
39158930 |
T |
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| Q |
199 |
ttgatctttcacttccagtcattgaacattctgttttttctttcaaaccattctctt |
255 |
Q |
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| T |
39158931 |
ttgatctttcattttttgtcattgaacattctgttttttctttcaaaccattctctt |
39158987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 115 - 252
Target Start/End: Complemental strand, 44795281 - 44795144
Alignment:
| Q |
115 |
gagcgactcattcccttacacaacaatgaaatgtaaggcatctttgaatatggttgctcttctattgcattcaccatttttaatttgatctttcacttcc |
214 |
Q |
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| T |
44795281 |
gagcgactcattcccttacacaacattgaaatgaatgacatctttgaatatggttgctcttctattgcattcaccatttttaatttgatctttcatttcc |
44795182 |
T |
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| Q |
215 |
agtcattgaacattctgttttttctttcaaaccattct |
252 |
Q |
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| T |
44795181 |
ggtcattgaacattctgttttttctttcaaaccattct |
44795144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 133 - 293
Target Start/End: Complemental strand, 39482365 - 39482202
Alignment:
| Q |
133 |
cacaacaatgaaatgtaaggcatctttgaatatggttgctcttctattgcattcaccatttttaatttga--tctt---tcacttccagtcattgaacat |
227 |
Q |
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| T |
39482365 |
cacaacattgaaatgtaaggcatctttgaatatggttactcttctattgcattcacca-ttttaatttgatttctttcatcattttcagtcattgaacat |
39482267 |
T |
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| Q |
228 |
tctgttttttctttcaaaccattctctttgagcaataaccagctattctcaacttcaatttgatcc |
293 |
Q |
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| T |
39482266 |
tctgttttttctttcaaaccatactc-acgagcaataaacagctgcactcgacttcaatttgatcc |
39482202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 39480848 - 39480747
Alignment:
| Q |
153 |
catctttgaatatggttgctcttctattgcattcaccatttttaatttgatctttcacttccagtcattgaacattctgttttttctttcaaaccattct |
252 |
Q |
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| T |
39480848 |
catctttgaatatggtggctcttccattgcattcaccatttttaatttgatc-ttcattttctgccattgaacattctgttttttctttcaaaccattct |
39480750 |
T |
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| Q |
253 |
ctt |
255 |
Q |
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||| |
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| T |
39480749 |
ctt |
39480747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 38884436 - 38884370
Alignment:
| Q |
40 |
taacgctacaaaagtacacatgactacatt----acatgtttttgattgttgaaagacatgttcaaa |
102 |
Q |
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| T |
38884436 |
taacgctacaaaagtacacatgactacatacatcacatgtgcttgattgttgaaagacatgttcaaa |
38884370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 293
Target Start/End: Complemental strand, 38884312 - 38884128
Alignment:
| Q |
119 |
gactcattcccttacacaacaatgaa--atgtaaggcatctttgaat-----atggttgctcttctattgcattcaccatttttaatttgatctt--tca |
209 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||| | | |||||| |||||||||| ||||||||||||||| ||| | || || |
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| T |
38884312 |
gactcattccctaacacaacaatgaattatgtaaggcatctttaattttattatggtttctcttctatttcattcaccatttttatttttaatttgatct |
38884213 |
T |
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| Q |
210 |
cttccagtcattg---aacattctgttttttctttcaaaccattctctttgagcaataaccagctattctcaacttcaatttgatcc |
293 |
Q |
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| T |
38884212 |
ctttca-tcatttccaaacattctgttatttctttcaaactattctc-ctgagcagtaaccaactgctctcagcttcaatttgatcc |
38884128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 19810737 - 19810853
Alignment:
| Q |
99 |
caaagcaacacaaatagagcgactcattcccttacacaacaatgaaatgtaaggcatctttgaatatggttgctcttctattgcattcaccatttttaat |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19810737 |
caaagcaacacaaatagagcgactcattcccttacacaacaatgaaatgtaagacatctttgaatatggttgctcttctattgcattcaccatttttaat |
19810836 |
T |
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| Q |
199 |
ttgatctttcacttcca |
215 |
Q |
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| T |
19810837 |
ttgatctttcacttcca |
19810853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 19810618 - 19810705
Alignment:
| Q |
15 |
ataaaattcatttacagaatagtactaacgctacaaaagtacacatgactacattacatgtttttgattgttgaaagacatgttcaaa |
102 |
Q |
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| T |
19810618 |
ataaaattcatttacataatagtactaacgctacaaaagtacacatgactacattacatgtttttgattgttgaaagacatgttcaaa |
19810705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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