View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_low_2 (Length: 876)
Name: NF4426_low_2
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 783; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 783; E-Value: 0
Query Start/End: Original strand, 16 - 860
Target Start/End: Complemental strand, 32508376 - 32507529
Alignment:
| Q |
16 |
tcatccaacggttataattacctaactgcaatgactgtgaatttgttacggcagagaatctaggtctccaaatcagctgagtaagtaggtaagctaccat |
115 |
Q |
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| T |
32508376 |
tcatccaacggttataattacctaactgcaatgactgtgaatttgttacagcagagaatctaggtctccaaatcagctgagtaagtaggtaagctaccat |
32508277 |
T |
|
| Q |
116 |
tcatcaagataacttggatcaattcccttccnnnnnnn-cctcttctaccatagcctataagctataactatgacgcctaattaactcctcagtcacaat |
214 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32508276 |
tcatcaagataacttggatcacttcccttccttttttttcctcttctaccatagcctataagctataactatgacgcctaattaactcctcagtcacaat |
32508177 |
T |
|
| Q |
215 |
catgaaccatcacatgctaaagaggaaaagaagaaaaccacaccaaatcaaggaaatttttccttatagcaagctcagaatcaactcttacgcaactagt |
314 |
Q |
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| T |
32508176 |
catgaaccatcacatgctaaagaggaaaagaagaaaaccacaccaaatcaaggaaatttttccttatagcaagctcagaatcaactcttacgcaactagt |
32508077 |
T |
|
| Q |
315 |
ttctttagtaaaacagcttccactgttcatagacaatgacttctcatctaaatgcttccagaactcaagcacgaaagggatagatcatacacactaaaac |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32508076 |
ttctttagtaaaacagcttccactgttcatagacaatgacttctcatctaaatgcttccagaactcaagcacgaaagggatagatcatacacactaaaac |
32507977 |
T |
|
| Q |
415 |
tatagaactggattgatctttcaattccctttagcagcataaggaagcaatagaagaatgatgaaaggtcacaataaaaacagtaataaaaaagtaagaa |
514 |
Q |
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| T |
32507976 |
tatagaactggattgatctttcaattccctttaagagcataaggaagcaatagaagaatgatgaaaggtcacaataaaaacagtaataaaaaagtaagaa |
32507877 |
T |
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| Q |
515 |
aacaatcatttctcactaaaaagaaccctctttcatctcttccctcatttgaaacatgacataacaaccaaattaaatcttgagcatacactacaagttc |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32507876 |
aacaatcatttctcactaaaaagaaccctctttcatctcttccctcatttgaaacatgacataacaaccaaactaaatcttgagcatacactacaagttc |
32507777 |
T |
|
| Q |
615 |
atatattggcttattccggaa-tttccctgttttgtaacagagagaaagctcacaacttcatctagctcttcacaaacatggaaagtatatgaagataaa |
713 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32507776 |
atatattggcttattccggaattttccctgttttgtaacagagagaaagctcacaacttcatctagctcttcacaaacatggaaagtatatgaagataaa |
32507677 |
T |
|
| Q |
714 |
tcaagcaaactatagctataatgcatattttcataccaaaactaaaacttg-ataacaaattacacaatagatatatagtcactacaaattgtaacaaag |
812 |
Q |
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| T |
32507676 |
tcaagcaaactatagctataatgcatattttcataccaaaactaaaacttgaataacaaattacacaatagatatatagtcactacaaattgtaacaaag |
32507577 |
T |
|
| Q |
813 |
tttaaacaacatcaaacatagtaatacaacaaagataaccaaacatat |
860 |
Q |
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| T |
32507576 |
tttaaacaacatcaaacatagtaatacaacaaagataaccaaacatat |
32507529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 712 - 788
Target Start/End: Complemental strand, 9763761 - 9763684
Alignment:
| Q |
712 |
aatcaagcaaactatagctataatgcatattttcatacc-aaaactaaaacttgataacaaattacacaatagatata |
788 |
Q |
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||||||| ||||||||||||| || ||| |||||||||| |||| |||||||||||||||||||||| ||||| |||| |
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| T |
9763761 |
aatcaagaaaactatagctatgattcatgttttcataccaaaaattaaaacttgataacaaattacataatagttata |
9763684 |
T |
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