View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_low_20 (Length: 357)
Name: NF4426_low_20
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 4 - 348
Target Start/End: Complemental strand, 10874692 - 10874342
Alignment:
| Q |
4 |
agacctataattggttactataaattgaactcatatattaattggcgtaaaaacacacattaaaagaaagagaatgataca--------ctttcatatta |
95 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
10874692 |
agacctataattggatactataaattgaactcatatattaattggtgtaaaaacacacgttaaaagaaagagaatgatacattaatagactttcatattc |
10874593 |
T |
|
| Q |
96 |
tctatctcnnnnnnnattgtcttaattttatatcataaacacgnnnnnnnnn--gcagcgcaagtgatatattaaactaattagtttcagttaacaataa |
193 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
10874592 |
tctatctcttttttaattgtcttaattttatatcataaacacgtttttttttttgcagcgcaagtgatatattaaactaattagtttcagtgaacaacaa |
10874493 |
T |
|
| Q |
194 |
aattaaatatatagtatagtttaattagtttatgcagggaaataatttagtttagtcaacacaaggcttctagctagtttattatctacacattacaata |
293 |
Q |
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|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10874492 |
aa----atatatagtatagtttaattagtttctgcagggaaataatttagtttagtcaacacaaggcttctagctagtttattatctacacattacaata |
10874397 |
T |
|
| Q |
294 |
ttccttctggttgtgcacgagttcattacgatctagctacgaaacttctgttaac |
348 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10874396 |
ttccttctggttgtgcacgagttcattacgatctagctacgaaacttctgttaac |
10874342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 4 - 348
Target Start/End: Complemental strand, 10884834 - 10884484
Alignment:
| Q |
4 |
agacctataattggttactataaattgaactcatatattaattggcgtaaaaacacacattaaaagaaagagaatgataca--------ctttcatatta |
95 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
10884834 |
agacctataattggatactataaattgaactcatatattaattggtgtaaaaacacacgttaaaagaaagagaatgatacattaatagactttcatattc |
10884735 |
T |
|
| Q |
96 |
tctatctcnnnnnnnattgtcttaattttatatcataaacacgnnnnnnnnn--gcagcgcaagtgatatattaaactaattagtttcagttaacaataa |
193 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
10884734 |
tctatctcttttttaattgtcttaattttatatcataaacacgtttttttttttgcagcgcaagtgatatattaaactaattagtttcagtgaacaacaa |
10884635 |
T |
|
| Q |
194 |
aattaaatatatagtatagtttaattagtttatgcagggaaataatttagtttagtcaacacaaggcttctagctagtttattatctacacattacaata |
293 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10884634 |
aa----atatatagtatagtttaattagtttctgcagggaaataatttagtttagtcaacacaaggcttctagctagtttattatctacacattacaata |
10884539 |
T |
|
| Q |
294 |
ttccttctggttgtgcacgagttcattacgatctagctacgaaacttctgttaac |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10884538 |
ttccttctggttgtgcacgagttcattacgatctagctacgaaacttctgttaac |
10884484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 348
Target Start/End: Complemental strand, 10879764 - 10879413
Alignment:
| Q |
4 |
agacctataattggttactataaattgaactcatatattaattggcgtaaaaacacacattaaaagaaagagaatgataca--------ctttcatatta |
95 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
10879764 |
agacctataattggatactataaattgaactcatatattaattggtgtaaaaacacacgttaaaagaaagagaatgatacattaatagactttcatattc |
10879665 |
T |
|
| Q |
96 |
tctatctcnnnnnnnattgtcttaattttatatcataaacacgnnnnnnnnn---gcagcgcaagtgatatattaaactaattagtttcagttaacaata |
192 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
10879664 |
tctatctcttttttaattgtcttaattttatatcataaacacgttttttttttttgcagcgcaagtgatatattaaactaattagtttcagtgaacaaca |
10879565 |
T |
|
| Q |
193 |
aaattaaatatatagtatagtttaattagtttatgcagggaaataatttagtttagtcaacacaaggcttctagctagtttattatctacacattacaat |
292 |
Q |
| |
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||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10879564 |
aaa----atatatagtatagtttaattagtttctgcagggaaataatttagtttagtcaacacaaggcttctagctagtttattatctacacattacaat |
10879469 |
T |
|
| Q |
293 |
attccttctggttgtgcacgagttcattacgatctagctacgaaacttctgttaac |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10879468 |
attccttctggttgtgcacgagttcattacgatctagctacgaaacttctgttaac |
10879413 |
T |
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Back To:
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