View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4426_low_22 (Length: 347)

Name: NF4426_low_22
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4426_low_22
NF4426_low_22
[»] chr3 (3 HSPs)
chr3 (207-336)||(12404829-12404958)
chr3 (93-168)||(12404685-12404760)
chr3 (16-45)||(12404568-12404597)
[»] chr7 (2 HSPs)
chr7 (83-153)||(18037851-18037921)
chr7 (140-168)||(24937858-24937886)
[»] chr1 (1 HSPs)
chr1 (81-173)||(13643596-13643688)
[»] chr5 (2 HSPs)
chr5 (283-342)||(38727930-38727989)
chr5 (140-168)||(14152530-14152558)
[»] chr8 (2 HSPs)
chr8 (81-123)||(34085205-34085247)
chr8 (81-162)||(3137433-3137514)
[»] chr6 (4 HSPs)
chr6 (135-168)||(9213095-9213128)
chr6 (102-163)||(10008225-10008286)
chr6 (81-146)||(33607750-33607815)
chr6 (140-168)||(28048799-28048827)
[»] chr4 (1 HSPs)
chr4 (140-168)||(37461824-37461852)
[»] chr2 (1 HSPs)
chr2 (89-169)||(33635539-33635619)


Alignment Details
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 207 - 336
Target Start/End: Original strand, 12404829 - 12404958
Alignment:
Q  207 tgtagatattgattaattgattgcttgttataggtatccatcacatggaagaagagaagctagagagtgtggaattccatgggaaaggataagagcacct 306  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12404829 tgtagatattggttaattgattgcttgttataggtatccttcacatggaagaagagaagctagagagtgtggaattccatgggaaaggataagagcacct 12404928  T
Q  307 cctgttgatatctctccacatgatcttcat 336  Q
    ||||||||||||||||||||||||||||||    
T  12404929 cctgttgatatctctccacatgatcttcat 12404958  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 12404685 - 12404760
Alignment:
Q  93 cataaataaaaattttgtgttgaaagtataaatcgattcttctgatcaagtaataattacaccactttttataaaa 168  Q
    ||||||||||  |||||| |||||||||||||| | ||||| ||| |||||||  ||||||| |||||||||||||    
T  12404685 cataaataaactttttgtcttgaaagtataaattggttcttttgagcaagtaacgattacactactttttataaaa 12404760  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 12404568 - 12404597
Alignment:
Q  16 attaaattggttcacattggttatatattt 45  Q
    ||||||||||||||||||||||||||||||    
T  12404568 attaaattggttcacattggttatatattt 12404597  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 18037851 - 18037921
Alignment:
Q  83 ttaagaaattcataaataaaaattttgtgttgaaagtataaatcgattcttctgatcaagtaataattaca 153  Q
    ||||||||| |||||||||||||||||| |||||| ||||||| | | ||| ||||||| |||||||||||    
T  18037851 ttaagaaatccataaataaaaattttgttttgaaaatataaattgttacttttgatcaaataataattaca 18037921  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 168
Target Start/End: Complemental strand, 24937886 - 24937858
Alignment:
Q  140 aagtaataattacaccactttttataaaa 168  Q
    |||||||||||||||||||||||||||||    
T  24937886 aagtaataattacaccactttttataaaa 24937858  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 173
Target Start/End: Complemental strand, 13643688 - 13643596
Alignment:
Q  81 ggttaagaaattcataaataaaaattttgtgttgaaagtataaatcgattcttctgatcaagtaataattacaccactttttataaaatttta 173  Q
    ||||||| ||||||||| ||||||  |||| |||||| |||||| || | ||| |||  || |||| |||||||||||||| |||||||||||    
T  13643688 ggttaaggaattcataagtaaaaaaattgtcttgaaaatataaaccgttacttttgacaaattaattattacaccacttttaataaaatttta 13643596  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 38727989 - 38727930
Alignment:
Q  283 ccatgggaaaggataagagcacctcctgttgatatctctccacatgatcttcatctcact 342  Q
    |||||||||||| |||||||||| ||||| ||||   ||||||||||||||||| |||||    
T  38727989 ccatgggaaaggctaagagcaccgcctgtcgatacgcctccacatgatcttcatatcact 38727930  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 168
Target Start/End: Original strand, 14152530 - 14152558
Alignment:
Q  140 aagtaataattacaccactttttataaaa 168  Q
    |||||||||||||||||||||||||||||    
T  14152530 aagtaataattacaccactttttataaaa 14152558  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 34085205 - 34085247
Alignment:
Q  81 ggttaagaaattcataaataaaaattttgtgttgaaagtataa 123  Q
    |||||||||||||||||||||||| ||||| |||||| |||||    
T  34085205 ggttaagaaattcataaataaaaaatttgttttgaaaatataa 34085247  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 3137514 - 3137433
Alignment:
Q  81 ggttaagaaattcataaataaaaattttgtgttgaaagtataaatcgattcttctgatcaagtaataattacaccacttttt 162  Q
    |||||||||||||| ||||| ||||||||| |||||| | |||   | | ||| |||||||||||| ||||||| |||||||    
T  3137514 ggttaagaaattcagaaatagaaattttgtcttgaaaatgtaagatgttacttttgatcaagtaattattacacaacttttt 3137433  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 9213095 - 9213128
Alignment:
Q  135 tgatcaagtaataattacaccactttttataaaa 168  Q
    |||||||||||||||||||| |||||||||||||    
T  9213095 tgatcaagtaataattacactactttttataaaa 9213128  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 10008286 - 10008225
Alignment:
Q  102 aaattttgtgttgaaagtataaatcgattcttctgatcaagtaataattacaccacttttta 163  Q
    ||||||||| || ||| ||||||  | | ||| |||||||||||||||||||||||||||||    
T  10008286 aaattttgtcttaaaaatataaacggttacttttgatcaagtaataattacaccacttttta 10008225  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 33607750 - 33607815
Alignment:
Q  81 ggttaagaaattcataaataaaaattttgtgttgaaagtataaatcgattcttctgatcaagtaat 146  Q
    |||||||||||||||||||||||||| |||  | ||| ||||||  | | ||||||||||||||||    
T  33607750 ggttaagaaattcataaataaaaattatgtcattaaaatataaagtgttacttctgatcaagtaat 33607815  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 168
Target Start/End: Original strand, 28048799 - 28048827
Alignment:
Q  140 aagtaataattacaccactttttataaaa 168  Q
    |||||||||||||||||||||||||||||    
T  28048799 aagtaataattacaccactttttataaaa 28048827  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 168
Target Start/End: Original strand, 37461824 - 37461852
Alignment:
Q  140 aagtaataattacaccactttttataaaa 168  Q
    |||||||||||||||||||||||||||||    
T  37461824 aagtaataattacaccactttttataaaa 37461852  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 33635619 - 33635539
Alignment:
Q  89 aattcataaataaaaattttgtgttgaaagtataaatcgattcttctgatcaagtaataattacaccactttttataaaat 169  Q
    |||| |||||| |||| ||||| |||||| |||||||     ||| |||| |||||||||||||| |||||||||||||||    
T  33635619 aatttataaatgaaaaatttgtcttgaaaatataaattttgacttttgattaagtaataattacatcactttttataaaat 33635539  T

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