View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_low_24 (Length: 334)
Name: NF4426_low_24
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 318
Target Start/End: Complemental strand, 30214364 - 30214041
Alignment:
| Q |
10 |
acatcatcactagttagtaaatatttacgtcatnnnnnnnttagtgagtattttattttct--gtcacaataattcacttttataaatgttccacatann |
107 |
Q |
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| T |
30214364 |
acatcatcactagttagtaaatatttacgtcataaaaaaattagtgaatattttattttctctgtcacaataattcacttttataaatgttccacatatt |
30214265 |
T |
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| Q |
108 |
nnnnnnnnnnnnggtggaaatcccacgtatttttaataaaaagttaaaataaataa---------------tcataatgtgaacggggcttaatattttc |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30214264 |
tttatttttt--ggtggaaatcccacgtatttttaataaaaagttaaaataaataaagattaaaaaaataatcataatgtgaacggggcttaatattttc |
30214167 |
T |
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| Q |
193 |
aaggttgtcctgtccatttctgttttactgagtctatcatcatttatgtacaactacaattttaatttgtgttgtaatggaagaggtacatgttggatgg |
292 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30214166 |
aaggatgtcctgtccatttctgttttactgagtctatcatcatttatgtacaactacaattttaatttgtgttgtaatggaagaggtacatgttggatgg |
30214067 |
T |
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| Q |
293 |
aaatacacttcatgtgatgtgaagag |
318 |
Q |
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||||||||||||| |||||||||||| |
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| T |
30214066 |
aaatacacttcatctgatgtgaagag |
30214041 |
T |
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