View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_low_25 (Length: 322)
Name: NF4426_low_25
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 7 - 307
Target Start/End: Original strand, 53795190 - 53795490
Alignment:
| Q |
7 |
gcagcacagaccacgtatacgagagataagcaccacccaaatctatggcatggaatcaagcactttgtctctttaccattgaatctaaagcaaaaaacca |
106 |
Q |
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| T |
53795190 |
gcagcccaggccacgtatacgagagataagcaccacccaaatctatggcatggaatcaagcactttgtctctttaccattgaatctaaagcaaaaaacca |
53795289 |
T |
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| Q |
107 |
aacacgcaatctcaatttcacactaactaaacgcaatttaaccatcatatttatacaacactaaatcattcattcctcttagatttcctctcacgatctt |
206 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53795290 |
aacacgtaatctcaatttcacactaactaaacgcaatttaaccatcatatttatacaacactaaatcattcattcctcttagatttcctctcacgatctt |
53795389 |
T |
|
| Q |
207 |
tttatccacacttttggtttctcaatagatagaaaccaaaacatggccttctccacctcttctttactttctacaaacttcttaggagtacgaaacattc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
53795390 |
tttatccacacttttggtttctcaatagatagaaaccaaaccatggccttctctacctcttccttactttctacaaacttcttaggagcacgaaacattc |
53795489 |
T |
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| Q |
307 |
c |
307 |
Q |
| |
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| |
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| T |
53795490 |
c |
53795490 |
T |
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