View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4426_low_28 (Length: 313)

Name: NF4426_low_28
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4426_low_28
NF4426_low_28
[»] chr1 (1 HSPs)
chr1 (1-298)||(37465843-37466122)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 37465843 - 37466122
Alignment:
Q  1 aaagcaacgtcgaacaaaaaaccacaagaataacaaatacttagttgtaggataaaaaccccatctggctcaagcaataaaattgtcattgcagaagcct 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37465843 aaagcaacgtcgaacaaaaaaccacaagaataataaatacttagttgtaggataaaaaccccatctggctcaagcaataaaattgtcattgcagaagcct 37465942  T
Q  101 gcaactagtgttgtctattgcagatcatgaaaaataagaaactagcagtttcctctacaatgttaaattcagacttgagacaatgatcaactggcagttt 200  Q
    ||||||                  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  37465943 gcaact------------------tcatgaaaaataagaaactagcagtttccactacaatgttaaattcagacttgagacaatgatcaactagcagttt 37466024  T
Q  201 ttgctacatttcacatattacaatttacaacccaaacaacactacaacacctatatctataataagaaacacaaatttcacttgcagttgtaattatt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37466025 ttgctacatttcacatattacaatttacaacccaaacaacactacaacacctatatctataataagaaacacaaatttcacttgcagttgtaattatt 37466122  T

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