View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_low_3 (Length: 553)
Name: NF4426_low_3
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 15 - 538
Target Start/End: Complemental strand, 2090764 - 2090241
Alignment:
| Q |
15 |
catcacactcgcctatcattatctttatcaattcttcttgataatcataatcactctttaaatggagggtaaaatttttagaaagaagaggacaatgggg |
114 |
Q |
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| T |
2090764 |
catcacactcgcctatcattatctttatcaattcttcttgataatcataatcactctttaaatggagggtaaaatttttagaaagaagaggacaatgggg |
2090665 |
T |
|
| Q |
115 |
ataaggaagcctaaatccttattcaaccgtctccccacagagcttcaaacaaaaatctttggtgggctatctatgaaggatcaatcaaaggctatgtgtg |
214 |
Q |
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| T |
2090664 |
ataaggaagcctaaatccttattcaaccatctccccacagagcttcaaacaaaaatctttggtgggctatctatgaaggatcaatcaaaggctatgtgtg |
2090565 |
T |
|
| Q |
215 |
tctcgcactcatggcgtaatcgcattctaatcacaacacttccaaaggagtatccattacaacctttggtgtttcctcacctttcccctcacccatttta |
314 |
Q |
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| T |
2090564 |
tctcgcactcatggcgtaatcgcatcctaaccacaacacttccaaaggagtatccattacaacctttggtgtttcctcacctttcccctcacccatttta |
2090465 |
T |
|
| Q |
315 |
tggcctagaacaattttttaattggtgctcattagtgatgtgttgcaatgtcagttcaagaaatattatagacacatgcaatgggttattcttgttttgc |
414 |
Q |
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| T |
2090464 |
tggcctacaacaattttttaattggtgctcattagtgatgtgttgcaatgtaagttcaagaaatattatagacacatgcaatgggttattcttgttttgc |
2090365 |
T |
|
| Q |
415 |
cataaggatggtcaagctaggaatattgtgcgtggtgtctaccactactatgtcatgaatcctataagaaaacaatgtgtggctattttgaagccttctg |
514 |
Q |
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| T |
2090364 |
cataaggatggtcaagctaggaatattgtgcgtggtgtctaccactactatgtcatgaatcctataagaaaacaatgtgtggctattttgaagccttctg |
2090265 |
T |
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| Q |
515 |
gacaattttttggaggaaattcat |
538 |
Q |
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| T |
2090264 |
gacaattttttggaggaaattcat |
2090241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 251
Target Start/End: Original strand, 2878654 - 2878809
Alignment:
| Q |
96 |
aaagaagaggacaatggggataaggaagcctaaatccttattcaaccgtctccccacagagcttcaaacaaaaatctttggtgggctatctatgaaggat |
195 |
Q |
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||||||||| || ||||||| ||||||||| | |||||| |||||| |||||||| | | ||||||| ||||| ||| || || | || || ||||| |
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| T |
2878654 |
aaagaagagaactatggggaaaaggaagcccagatccttcttcaacaatctccccataaatattcaaacgaaaatattttgtaggttgtcgttggaggat |
2878753 |
T |
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| Q |
196 |
caatcaaaggctatgtgtgtctcgcactcatggcgtaatcgcattctaatcacaac |
251 |
Q |
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| T |
2878754 |
caatcaaaagctatgtgtgtctcgaatgaatggcgtaatcacgttctaaacacaac |
2878809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 2727373 - 2727332
Alignment:
| Q |
189 |
gaaggatcaatcaaaggctatgtgtgtctcgcactcatggcg |
230 |
Q |
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| T |
2727373 |
gaaggatcaatcaaaagctatgtgtgtctcacactcatggcg |
2727332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 509
Target Start/End: Original strand, 2878944 - 2879067
Alignment:
| Q |
386 |
acacatgcaatgggttattcttgttttgccataaggatggtcaagctaggaatattgtgcgtggtgtctaccactactatgtcatgaatcctataagaaa |
485 |
Q |
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| T |
2878944 |
acacatgcaatggcttactattgttttgccacaatgatggtgaggctaccaacatcttgcgtggtgtctattattactatgtcctgaatccagtcacaaa |
2879043 |
T |
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| Q |
486 |
acaatgtgtggctattttgaagcc |
509 |
Q |
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|||||||||| || || ||||||| |
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| T |
2879044 |
acaatgtgtgactgttatgaagcc |
2879067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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