View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4426_low_31 (Length: 299)

Name: NF4426_low_31
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4426_low_31
NF4426_low_31
[»] chr2 (12 HSPs)
chr2 (18-272)||(30857691-30857939)
chr2 (14-76)||(35315297-35315359)
chr2 (14-77)||(35316828-35316891)
chr2 (14-80)||(19908780-19908846)
chr2 (14-77)||(28564895-28564958)
chr2 (14-76)||(38397085-38397147)
chr2 (14-77)||(13238684-13238747)
chr2 (14-77)||(23259496-23259559)
chr2 (14-80)||(374993-375059)
chr2 (14-80)||(21454504-21454569)
chr2 (14-80)||(30709110-30709176)
chr2 (51-83)||(33205799-33205831)
[»] chr8 (11 HSPs)
chr8 (14-77)||(10672521-10672584)
chr8 (14-84)||(21486301-21486369)
chr8 (14-77)||(24102019-24102082)
chr8 (14-77)||(30426678-30426741)
chr8 (44-78)||(21486925-21486959)
chr8 (14-77)||(28069722-28069785)
chr8 (15-82)||(36748502-36748568)
chr8 (14-77)||(36991359-36991422)
chr8 (14-76)||(24557190-24557252)
chr8 (14-80)||(26749557-26749623)
chr8 (14-80)||(42761713-42761779)
[»] chr3 (10 HSPs)
chr3 (17-76)||(10474450-10474509)
chr3 (17-77)||(19830443-19830503)
chr3 (14-80)||(1995444-1995510)
chr3 (40-76)||(47914202-47914238)
chr3 (14-77)||(2229986-2230049)
chr3 (14-77)||(34373594-34373657)
chr3 (14-77)||(43719956-43720019)
chr3 (14-79)||(4659282-4659348)
chr3 (14-80)||(25285846-25285912)
chr3 (14-80)||(31523677-31523743)
[»] chr5 (17 HSPs)
chr5 (14-76)||(29340999-29341061)
chr5 (15-83)||(25879592-25879660)
chr5 (14-77)||(4895744-4895807)
chr5 (14-77)||(11775796-11775859)
chr5 (14-73)||(27428890-27428949)
chr5 (38-77)||(28142808-28142847)
chr5 (14-77)||(35660618-35660681)
chr5 (14-83)||(3057413-3057482)
chr5 (14-83)||(18653358-18653427)
chr5 (14-77)||(3057163-3057226)
chr5 (14-77)||(14349806-14349869)
chr5 (14-77)||(18625430-18625493)
chr5 (14-77)||(32129626-32129689)
chr5 (14-77)||(34827195-34827258)
chr5 (14-77)||(37266734-37266797)
chr5 (15-77)||(40753172-40753234)
chr5 (14-80)||(43309108-43309174)
[»] chr4 (14 HSPs)
chr4 (14-84)||(1871273-1871343)
chr4 (14-77)||(34778424-34778487)
chr4 (14-77)||(19901927-19901990)
chr4 (14-76)||(23474115-23474177)
chr4 (14-80)||(37002260-37002326)
chr4 (15-80)||(40215455-40215520)
chr4 (14-77)||(5416475-5416537)
chr4 (14-77)||(5763171-5763234)
chr4 (29-80)||(31862244-31862295)
chr4 (14-77)||(33262561-33262624)
chr4 (14-77)||(56558282-56558345)
chr4 (38-80)||(52030727-52030769)
chr4 (14-80)||(56269085-56269151)
chr4 (14-80)||(56453829-56453895)
[»] scaffold0250 (1 HSPs)
scaffold0250 (14-77)||(7150-7213)
[»] chr7 (12 HSPs)
chr7 (14-77)||(32915959-32916022)
chr7 (14-77)||(4888470-4888533)
chr7 (14-77)||(25084737-25084800)
chr7 (15-80)||(40023266-40023331)
chr7 (14-77)||(12139329-12139393)
chr7 (14-77)||(9559063-9559126)
chr7 (14-77)||(16366521-16366584)
chr7 (14-77)||(21151155-21151218)
chr7 (14-77)||(45260436-45260499)
chr7 (14-84)||(989125-989195)
chr7 (14-80)||(47799909-47799975)
chr7 (17-77)||(18198259-18198319)
[»] chr6 (9 HSPs)
chr6 (14-80)||(2800620-2800686)
chr6 (14-77)||(4804451-4804514)
chr6 (14-77)||(7162087-7162150)
chr6 (14-77)||(27826541-27826604)
chr6 (14-80)||(12734410-12734475)
chr6 (23-77)||(29698166-29698220)
chr6 (39-84)||(2720369-2720414)
chr6 (17-77)||(21159381-21159441)
chr6 (14-76)||(17828577-17828639)
[»] chr1 (10 HSPs)
chr1 (31-84)||(5047407-5047460)
chr1 (15-80)||(32887790-32887855)
chr1 (14-80)||(26372252-26372318)
chr1 (31-76)||(32618805-32618850)
chr1 (12-80)||(24413289-24413357)
chr1 (25-81)||(49943989-49944045)
chr1 (14-77)||(12151770-12151833)
chr1 (19-77)||(12380924-12380982)
chr1 (19-77)||(12384991-12385049)
chr1 (14-80)||(39426210-39426276)
[»] scaffold0126 (1 HSPs)
scaffold0126 (9-77)||(22446-22514)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 30857691 - 30857939
Alignment:
Q  18 tagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattattttatatagtattttgttttcaaactattaagaaagtctt 117  Q
    |||||||||||| ||||||||||||||||||||||| ||  || |||||||||||||||||||||||      || ||||||||||||||||||||||||    
T  30857691 tagacacaaaaaatagataatggatcctactattaaatggatcacaccatcattaattattttatat------tttttttcaaactattaagaaagtctt 30857784  T
Q  118 caataaatttccaaaaacatggtccaattgaacatgtcttaaacaatgtgttcttactcaaatcaaataatgaactgagtgaatggattgatgacattca 217  Q
    ||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30857785 caataaatttccacaaaaatgctccaattgaacatgtcttaaacaatgtgttcttactcaaatcaaataatgaactgagtgaatggattgatgacattca 30857884  T
Q  218 atttcatagattaattttattttctaaatgtagggaccaaataacataatctata 272  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||    
T  30857885 atttcatagattaattttattttctaaatgtacggaccaaataagataatatata 30857939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 35315297 - 35315359
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaatta 76  Q
    |||||||||||| ||| ||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  35315297 gagatagacacataaaatagataatggatcttactattaattgagtcccaccattattaatta 35315359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 35316891 - 35316828
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| |||||  |||||||||| | |||||| ||||||||||||||||||||    
T  35316891 gagatagacacaaaaaatagatggtggatcctaccactaagtgggtcccaccatcattaattat 35316828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 19908846 - 19908780
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    |||||||||||| ||| |||||| ||  ||||||| ||||||| |||||||||||||||||||||||    
T  19908846 gagatagacacataaaatagatagtgagtcctacttttaagtgggtcccaccatcattaattatttt 19908780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 28564958 - 28564895
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  28564958 gagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 28564895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 38397147 - 38397085
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaatta 76  Q
    |||||||||| | ||| |||||| ||| | |||||||||||||||||||||||||| ||||||    
T  38397147 gagatagacaaataaaatagatagtgggtgctactattaagtgagtcccaccatcaataatta 38397085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 13238747 - 13238684
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| |||||  ||| |||||| |  ||||| ||||||||||||||||||||    
T  13238747 gagatagacacaaaaaatagatggtgggtcctaccaccaagtgggtcccaccatcattaattat 13238684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 23259496 - 23259559
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| ||| |  ||| |||||||| ||||||  |||||||||||||||||||    
T  23259496 gagatagacacaaaaaatagctggtgggtcctactactaagtggatcccaccatcattaattat 23259559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 375059 - 374993
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    |||||||||||||||| ||  |  ||| ||||| || |||||| |||||||||||||||||||||||    
T  375059 gagatagacacaaaaaataagtggtgggtcctattactaagtgggtcccaccatcattaattatttt 374993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 21454504 - 21454569
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    |||||||||||||||| |||||  ||| || ||| |||||||| || ||||||||||||||||||||    
T  21454504 gagatagacacaaaaa-tagattgtgggtcataccattaagtgggttccaccatcattaattatttt 21454569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 30709176 - 30709110
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    |||||||||||| ||| |||||| ||| |||||| | ||||||  ||||||||||||||||| ||||    
T  30709176 gagatagacacataaaatagatattgggtcctaccactaagtggatcccaccatcattaattgtttt 30709110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 33205831 - 33205799
Alignment:
Q  51 taagtgagtcccaccatcattaattattttata 83  Q
    ||||||||| |||||||||||||||||||||||    
T  33205831 taagtgagttccaccatcattaattattttata 33205799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 10672521 - 10672584
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| |||||  |||||||||| | |||||||||||||||||||||||||||    
T  10672521 gagatagacacaaaaaatagatggtggatcctaccactaagtgagtcccaccatcattaattat 10672584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 21486301 - 21486369
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattattttatat 84  Q
    |||||||||||||||  |||||||| |||| ||| | ||||| |||| |||||||||||||||||||||||    
T  21486301 gagatagacacaaaa--tagataatagatcttaccactaagtaagtctcaccatcattaattattttatat 21486369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 24102082 - 24102019
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||| ||||| |||||  |||||||||| | ||||||||| |||||||||||||||||    
T  24102082 gagatagacataaaaaatagatggtggatcctaccactaagtgagttccaccatcattaattat 24102019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 30426678 - 30426741
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  30426678 gagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 30426741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 78
Target Start/End: Complemental strand, 21486959 - 21486925
Alignment:
Q  44 ctactattaagtgagtcccaccatcattaattatt 78  Q
    |||||||||||||||||||||||||||||||||||    
T  21486959 ctactattaagtgagtcccaccatcattaattatt 21486925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 28069785 - 28069722
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||| ||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  28069785 gagaaagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 28069722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 36748502 - 36748568
Alignment:
Q  15 agatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattattttat 82  Q
    ||||||||||||||| |||| |  || |||||| ||||||||  ||||||||||||||||||||||||    
T  36748502 agatagacacaaaaa-tagacagcgggtcctaccattaagtggatcccaccatcattaattattttat 36748568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 36991422 - 36991359
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||| || || ||||| |||| |||||| | |||||| ||||||||||||||||||||    
T  36991422 gagatagacataagaaatagatgatgggtcctaccactaagtgggtcccaccatcattaattat 36991359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 24557190 - 24557252
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaatta 76  Q
    |||||| | ||| ||| ||| |||||| |||||| ||||||||||||||| ||||||||||||    
T  24557190 gagatatagacataaaataggtaatgggtcctaccattaagtgagtcccatcatcattaatta 24557252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 26749557 - 26749623
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    |||||||||||||||| ||  | |||| |||||  | |||||| |||||||||||||||||||||||    
T  26749557 gagatagacacaaaaaataagtgatgggtcctatcactaagtgggtcccaccatcattaattatttt 26749623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 42761779 - 42761713
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    |||||||||||| ||| |||||| |||||||||| | | |||| || ||| ||||||||||||||||    
T  42761779 gagatagacacataaaatagatagtggatcctaccactcagtgggttccatcatcattaattatttt 42761713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 10474450 - 10474509
Alignment:
Q  17 atagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaatta 76  Q
    ||||||||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||    
T  10474450 atagacacataaaatagataatggatcctactattaagtgagttccaccaacattaatta 10474509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 19830443 - 19830503
Alignment:
Q  17 atagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    ||||||||||||| |||||  ||| |||||| |||||||| ||||||||||||||||||||    
T  19830443 atagacacaaaaaatagatggtgggtcctaccattaagtgggtcccaccatcattaattat 19830503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 1995510 - 1995444
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    |||||||||| | ||| |||||||||  |||||| | |||||||||| |||||||||||||||||||    
T  1995510 gagatagacatagaaaatagataatgagtcctaccaataagtgagtctcaccatcattaattatttt 1995444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 47914202 - 47914238
Alignment:
Q  40 gatcctactattaagtgagtcccaccatcattaatta 76  Q
    ||||||| |||||||||||||||||||||||||||||    
T  47914202 gatcctattattaagtgagtcccaccatcattaatta 47914238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 2230049 - 2229986
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| ||||| |||| |||||| | ||||||  | |||||||||||||||||    
T  2230049 gagatagacacaaaaaatagatgatgggtcctaccactaagtggtttccaccatcattaattat 2229986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 34373594 - 34373657
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    ||||||||||| |||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  34373594 gagatagacactaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 34373657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 43719956 - 43720019
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| || ||  ||| |||||| | |||||| ||||||||||||||||||||    
T  43719956 gagatagacacaaaaaataaattgtgggtcctaccactaagtgggtcccaccatcattaattat 43720019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 4659348 - 4659282
Alignment:
Q  14 gagatagacacaaaa-agtagataatggatcctactattaagtgagtcccaccatcattaattattt 79  Q
    ||||||||||||||| |||||||||| | || || |||||| ||||||||||||| |||||| ||||    
T  4659348 gagatagacacaaaatagtagataataggtcatattattaaatgagtcccaccattattaataattt 4659282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 25285846 - 25285912
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    |||||||||||| ||| |||||| |||||||||  ||||| |||| ||||||||||| |||| ||||    
T  25285846 gagatagacacataaaatagatagtggatcctatcattaaatgagacccaccatcatcaattttttt 25285912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 31523677 - 31523743
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    |||||||||||||||| ||  |  ||| ||||| || |||||| |||||||||||||||||||||||    
T  31523677 gagatagacacaaaaaataagtggtgggtcctattactaagtgggtcccaccatcattaattatttt 31523743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 29341061 - 29340999
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaatta 76  Q
    |||||||||||| ||| |||||| ||| ||||||||||||||| |||||||||||||||||||    
T  29341061 gagatagacacagaaaatagatagtgggtcctactattaagtgggtcccaccatcattaatta 29340999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 25879592 - 25879660
Alignment:
Q  15 agatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattattttata 83  Q
    ||||||| |||||||||||||| || | | || ||||||||| ||||||||||||||||||||||||||    
T  25879592 agatagatacaaaaagtagatagtgaaacttattattaagtgtgtcccaccatcattaattattttata 25879660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 4895744 - 4895807
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  4895744 gagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 4895807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 11775859 - 11775796
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| |||||  |||||||||| | |||||| |||||||| |||||||||||    
T  11775859 gagatagacacaaaaaatagatggtggatcctaccactaagtgggtcccaccgtcattaattat 11775796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 27428890 - 27428949
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaa 73  Q
    |||||||||||||||| |||||  || ||||||| ||||||||||| |||||||||||||    
T  27428890 gagatagacacaaaaaatagatggtgaatcctaccattaagtgagttccaccatcattaa 27428949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 28142808 - 28142847
Alignment:
Q  38 tggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  28142808 tggatcctaccattaagtgagtcccaccatcattaattat 28142847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 35660618 - 35660681
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  35660618 gagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 35660681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 3057482 - 3057413
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattattttata 83  Q
    |||||||||| |||||  |||| ||||||||||| |  |||||||| ||| |||||||||||||||||||    
T  3057482 gagatagacaaaaaaaaaagatgatggatcctaccacaaagtgagttccatcatcattaattattttata 3057413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 18653427 - 18653358
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattattttata 83  Q
    |||||||||||||||| |||||| ||  | |||| |||||||||||| |||||| | |||||||||||||    
T  18653427 gagatagacacaaaaaatagatagtgagttctaccattaagtgagtctcaccattaataattattttata 18653358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 3057163 - 3057226
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||| ||||||||| |||||  |||||||||| |||||||||||| ||  ||||||||||||    
T  3057163 gagataaacacaaaaaatagatggtggatcctaccattaagtgagtcacataatcattaattat 3057226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 14349869 - 14349806
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||| ||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  14349869 gagacagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 14349806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 18625430 - 18625493
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||| ||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  18625430 gagaaagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 18625493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 32129626 - 32129689
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    ||||||||||| |||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  32129626 gagatagacaccaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 32129689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 34827258 - 34827195
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||| ||||| |||||  |||||||||| | |||||| ||||||||||| ||||||||    
T  34827258 gagatagacaaaaaaaatagatggtggatcctaccactaagtgggtcccaccatctttaattat 34827195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 37266797 - 37266734
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| |||||  ||| || ||| | |||||| ||||||||||||||||||||    
T  37266797 gagatagacacaaaaaatagatggtgggtcataccactaagtgggtcccaccatcattaattat 37266734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 40753172 - 40753234
Alignment:
Q  15 agatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    ||||||||||||||| || ||  ||| |||||| | |||||| ||||||||||||||||||||    
T  40753172 agatagacacaaaaaatatatggtgggtcctaccactaagtgggtcccaccatcattaattat 40753234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 43309174 - 43309108
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    |||||||||| ||||| |||||| |||||| ||| ||||| || || ||||||||||||||| ||||    
T  43309174 gagatagacataaaaaatagatagtggatcttaccattaaatgggttccaccatcattaattttttt 43309108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 1871343 - 1871273
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattattttatat 84  Q
    |||||||||| ||||  |||||| |||||||||||| |||||| |||||| ||||||||||||||||||||    
T  1871343 gagatagacaaaaaatatagatagtggatcctactactaagtgggtcccatcatcattaattattttatat 1871273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 34778487 - 34778424
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| |||||  |||||||||| | |||||| ||||||||||||||||||||    
T  34778487 gagatagacacaaaaaatagatggtggatcctaccactaagtgggtcccaccatcattaattat 34778424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 19901927 - 19901990
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  19901927 gagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 19901990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 23474177 - 23474115
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaatta 76  Q
    |||||||||||| ||| |||||  ||| |||||||||| ||||| ||||||||||||||||||    
T  23474177 gagatagacacataaaatagatggtgggtcctactattgagtgaatcccaccatcattaatta 23474115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 37002260 - 37002326
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    |||||||||||||||| ||  |  ||||||||| || |||||| |||||||||||||||||||||||    
T  37002260 gagatagacacaaaaaataagtggtggatcctattactaagtgggtcccaccatcattaattatttt 37002326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 40215455 - 40215520
Alignment:
Q  15 agatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    ||||| ||| ||||| ||||| ||||||||||| | | ||||||||||||||||||||||| ||||    
T  40215455 agatacacataaaaattagattatggatcctaccacttagtgagtcccaccatcattaattttttt 40215520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 5416475 - 5416537
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  5416475 gagatagacacaaaaa-tagattgtgggtcctaccactaagtgggtcccaccatcattaattat 5416537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 5763171 - 5763234
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||| ||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  5763171 gagatagaaacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 5763234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 31862244 - 31862295
Alignment:
Q  29 agtagataatggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    |||||||  |||||||||| | |||||| |||||||||||||||||||||||    
T  31862244 agtagatggtggatcctaccactaagtgggtcccaccatcattaattatttt 31862295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 33262561 - 33262624
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| |||||  |||||||||| | ||| |  ||||||||||||||||||||    
T  33262561 gagatagacacaaaaaatagatggtggatcctaccactaaataggtcccaccatcattaattat 33262624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 56558345 - 56558282
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| |||||  ||| |||||  | |||||| ||||||||||||||||||||    
T  56558345 gagatagacacaaaaaatagatggtgggtcctatcactaagtgggtcccaccatcattaattat 56558282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 52030727 - 52030769
Alignment:
Q  38 tggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    |||||||||| | |||||| |||||||||||||||||||||||    
T  52030727 tggatcctacaaataagtgggtcccaccatcattaattatttt 52030769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 56269085 - 56269151
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    |||||||||||||||| ||  |  ||| |||||| | |||||| |||||||||||||||||||||||    
T  56269085 gagatagacacaaaaaataagtggtgggtcctaccactaagtgggtcccaccatcattaattatttt 56269151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 56453829 - 56453895
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    |||||||||||||||| ||| |  ||| |||||  |||||||| |||||||||||||| ||||||||    
T  56453829 gagatagacacaaaaaataggtggtgggtcctatcattaagtgggtcccaccatcattcattatttt 56453895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 7213 - 7150
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| |||||  ||| ||||||||||||||| || |||||||||||||||||    
T  7213 gagatagacacaaaaaatagatggtgggtcctactattaagtgggttccaccatcattaattat 7150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 32916022 - 32915959
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| || ||| ||| |||||| |||||||||||||||||||||| ||||||    
T  32916022 gagatagacacaaaaaataaatagtgggtcctaccattaagtgagtcccaccatcatgaattat 32915959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 4888533 - 4888470
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| |||||| ||| |||||| | |||||  ||||||||||||||||||||    
T  4888533 gagatagacacaaaaaatagatagtgggtcctaccactaagtaggtcccaccatcattaattat 4888470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 25084737 - 25084800
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  25084737 gagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 25084800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 40023266 - 40023331
Alignment:
Q  15 agatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    ||||||||| | ||| ||| ||||||||| ||| |||||||| ||||||||| |||||||||||||    
T  40023266 agatagacatataaaatagttaatggatcttaccattaagtgggtcccaccaccattaattatttt 40023331  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 12139393 - 12139329
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagt-gagtcccaccatcattaattat 77  Q
    |||||||||||||||| |||||  ||| |||||| ||||||| | ||||||||||||||||||||    
T  12139393 gagatagacacaaaaaatagatggtgggtcctaccattaagtggggtcccaccatcattaattat 12139329  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 9559063 - 9559126
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||| ||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  9559063 gagatagatacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 9559126  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 16366584 - 16366521
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||| || || |||||  |||||||||| | |||||| ||||||||||||||||||||    
T  16366584 gagatagacataagaaatagatggtggatcctaccactaagtgtgtcccaccatcattaattat 16366521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 21151218 - 21151155
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    ||||||||||||| || |||||   ||||||||| | |||||| ||||||||||||||||||||    
T  21151218 gagatagacacaagaaatagatggaggatcctaccactaagtgggtcccaccatcattaattat 21151155  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 45260436 - 45260499
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| |||||  |||||||||| | ||||||  ||||| |||||||||||||    
T  45260436 gagatagacacaaaaaatagattgtggatcctaccactaagtggatcccatcatcattaattat 45260499  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 989195 - 989125
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattattttatat 84  Q
    |||||||||||||||| || ||| ||| |||||| | |||||  |||| ||||| ||||||||||||||||    
T  989195 gagatagacacaaaaaatatatagtgggtcctaccactaagtaggtccaaccataattaattattttatat 989125  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 47799909 - 47799975
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    |||||||||||||||| ||  | |||| |||||  | |||||| |||||||||||||||||||||||    
T  47799909 gagatagacacaaaaaataagtgatgggtcctatcactaagtgggtcccaccatcattaattatttt 47799975  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 18198319 - 18198259
Alignment:
Q  17 atagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    ||||||||||||| |||||  ||| | || | | |||||||||||||||||||||||||||    
T  18198319 atagacacaaaaaatagatggtgggttctgccactaagtgagtcccaccatcattaattat 18198259  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 2800620 - 2800686
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    |||||||||||| ||| |||||| |||||| ||| |||||||| |||||||||||||| ||||||||    
T  2800620 gagatagacacataaaatagatagtggatcataccattaagtgggtcccaccatcattgattatttt 2800686  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 4804514 - 4804451
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  4804514 gagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 4804451  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 7162150 - 7162087
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    ||||||||||||| || |||||  ||| |||||||| |||||| ||||||||||||||||||||    
T  7162150 gagatagacacaagaaatagatggtgggtcctactactaagtgggtcccaccatcattaattat 7162087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 27826604 - 27826541
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||||||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  27826604 gagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 27826541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 12734475 - 12734410
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    |||||||| ||||||| ||||||||||| ||||  | ||||||| ||||||||||||||||||||||    
T  12734475 gagatagaaacaaaaactagataatgga-cctatcactaagtgaatcccaccatcattaattatttt 12734410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 29698220 - 29698166
Alignment:
Q  23 acaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    ||||||| |||||  |||||||||| |||||||| ||||||||||||||||||||    
T  29698220 acaaaaaatagatggtggatcctaccattaagtgggtcccaccatcattaattat 29698166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 2720414 - 2720369
Alignment:
Q  39 ggatcctactattaagtgagtcccaccatcattaattattttatat 84  Q
    ||||||||| | |||||| |||||||||||||||||||||||||||    
T  2720414 ggatcctaccactaagtgggtcccaccatcattaattattttatat 2720369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 21159381 - 21159441
Alignment:
Q  17 atagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    ||||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  21159381 atagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 21159441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 17828577 - 17828639
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaatta 76  Q
    |||||||||||| ||| |||||| ||||| |||||||||||||  ||||| ||||| ||||||    
T  17828577 gagatagacacataaaatagatagtggattctactattaagtggatcccatcatcaataatta 17828639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 5047407 - 5047460
Alignment:
Q  31 tagataatggatcctactattaagtgagtcccaccatcattaattattttatat 84  Q
    ||||||||||||||||| | || ||| |||||||||||||||||||||||||||    
T  5047407 tagataatggatcctaccactatgtgggtcccaccatcattaattattttatat 5047460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 32887790 - 32887855
Alignment:
Q  15 agatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    ||||||||||| ||| || ||| |||||||||| ||||| || |||||||||||||||||||||||    
T  32887790 agatagacacataaaataaatagtggatcctaccattaaatgggtcccaccatcattaattatttt 32887855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 26372318 - 26372252
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    |||||||||||  ||| |||| ||| |||||||| |||||||| ||||||||| |||||||||||||    
T  26372318 gagatagacacgtaaaatagacaatagatcctaccattaagtgggtcccaccaccattaattatttt 26372252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 32618850 - 32618805
Alignment:
Q  31 tagataatggatcctactattaagtgagtcccaccatcattaatta 76  Q
    |||||| ||||||||||||||||||  |||||||||||||||||||    
T  32618850 tagatagtggatcctactattaagtaggtcccaccatcattaatta 32618805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 24413289 - 24413357
Alignment:
Q  12 atgagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    |||||||||||||||||| | |||  ||| |||||  ||||| || |||||||||||||||||||||||    
T  24413289 atgagatagacacaaaaaatggatggtgggtcctatcattaaatgggtcccaccatcattaattatttt 24413357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 49943989 - 49944045
Alignment:
Q  25 aaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttta 81  Q
    ||||| ||||| |||| ||||| |||||| ||||||| |||||||||||||||||||    
T  49943989 aaaaaatagatgatgggtcctattattaaatgagtcctaccatcattaattatttta 49944045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 12151833 - 12151770
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||| ||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  12151833 gagaaagacacaaaaaatagattgtgggtcctaccactaagtgggtcccaccatcattaattat 12151770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 12380924 - 12380982
Alignment:
Q  19 agacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    ||||||||||| |||||  ||| | |||| | |||||||||||||||||||||||||||    
T  12380924 agacacaaaaaatagatggtgggttctaccactaagtgagtcccaccatcattaattat 12380982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 12384991 - 12385049
Alignment:
Q  19 agacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    ||||||||||| |||||  ||| | |||| | |||||||||||||||||||||||||||    
T  12384991 agacacaaaaaatagatggtgggttctaccactaagtgagtcccaccatcattaattat 12385049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 39426276 - 39426210
Alignment:
Q  14 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 80  Q
    |||||||||||| ||| |||||| ||| |||||| | ||| || ||||||| |||||||||||||||    
T  39426276 gagatagacacataaaatagatagtgggtcctaccactaattgggtcccactatcattaattatttt 39426210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 22446 - 22514
Alignment:
Q  9 acaatgagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 77  Q
    |||| |||||||||||||||| |||||| |||||||||| | ||||||||| |||| || |||||||||    
T  22446 acaaagagatagacacaaaaaatagatagtggatcctaccactaagtgagttccacaataattaattat 22514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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