View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_low_35 (Length: 290)
Name: NF4426_low_35
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 2752034 - 2752200
Alignment:
| Q |
7 |
atccctcgttacctaattatttttggaagctttaaaaaggccttatatatggtctaaactggttcccagcctaggttcaactatagtttcttcctcaccg |
106 |
Q |
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| T |
2752034 |
atccctcgttacctaattatttttggaagctttaaaaaggccttgtatatggtctaaactggctcccagcctaggttcaactctagtttcttcctcaccg |
2752133 |
T |
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| Q |
107 |
attatttattcataatttccaagtcagaaacttcgctcttcagctacccattcaggtttcgagtatat |
174 |
Q |
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| T |
2752134 |
attatttattcataatttccaagtcagaaacttcgctcttcagctaccca-tcaggtttcgagtatat |
2752200 |
T |
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Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 200 - 274
Target Start/End: Original strand, 2752199 - 2752273
Alignment:
| Q |
200 |
atcactccaaattcatttgcagccacattctttttgaaggatcacattccatcaacccacatattgtgtgttgaa |
274 |
Q |
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| T |
2752199 |
atcactccaaattcatttgcagccacattctttttgaaggatcacattctatcaacccacatattgtgtgttgaa |
2752273 |
T |
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