View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_low_40 (Length: 263)
Name: NF4426_low_40
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 3139871 - 3140092
Alignment:
| Q |
19 |
atttgtgcctgaatatcattaccttcctaaactgatttaaattataatgcgtgtgtttaattactcaaatattctatattagatgagtggtattagtaca |
118 |
Q |
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| T |
3139871 |
atttgtgcctgaatatcattaccttcctaaactgatttaaactataatgcgtgtggttaattactcaaatattctatattagatgagtggtattagtaca |
3139970 |
T |
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| Q |
119 |
acacagttttgatgtacttcaaatttgatttcaaaccgagaagcaaatttggtaaattagaaataattacggatgtaattttggcttcatcaatgaatga |
218 |
Q |
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| T |
3139971 |
acacagttttgatgtacttcaaatttgatttcaaaccgagaagcaaatttggtaaattagaaataattacggatgtaattttggcttcatcaatgaatga |
3140070 |
T |
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| Q |
219 |
tatatccatattttcttcgaca |
240 |
Q |
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| T |
3140071 |
tatatccatattttcttcgaca |
3140092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 23851140 - 23851045
Alignment:
| Q |
144 |
tgatttcaaaccgagaagcaaatttggtaaattagaaataattacggatgtaatttt----ggcttcatcaatgaatgatatatccatattttctt |
235 |
Q |
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| T |
23851140 |
tgatttcaaatcgagaagcaaaataagtaacttggaaacaattacggatgtaattttaatctgcttcatcaattaatgatatgtttatattttctt |
23851045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 23853272 - 23853216
Alignment:
| Q |
144 |
tgatttcaaaccgagaagcaaatttggtaaattagaaataattacggatgtaatttt |
200 |
Q |
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| T |
23853272 |
tgatttcaaaccgagaggcaaaataggtaacttggaaacaattacggatgtactttt |
23853216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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