View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_low_49 (Length: 246)
Name: NF4426_low_49
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 35428669 - 35428435
Alignment:
| Q |
1 |
atttaaactatttcaagatacatctattttgtttcgaggattctcccacaaaattaccatcagaaaattatttgtttaaaaataaattaattgtgaccca |
100 |
Q |
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| T |
35428669 |
atttaaactatttcaagatacatctattttgtttcgaggattctcccacaaaattaccaacagaaaattatttctttaaaaagaaattaattgtgaccca |
35428570 |
T |
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| Q |
101 |
ttgtgtgnnnnnnnagataaactaatgagacaatttcacctctagctcttcatggaatgtcaatggtcataataggtttggtttgattctcatttaggtg |
200 |
Q |
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| T |
35428569 |
ttgtgtgtttttttagataaactaatgagacaatttcacct----ctcttcatggaatgtcaatggtcataataggtttggtttggttctcatttaggtg |
35428474 |
T |
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| Q |
201 |
tcgtttttaattcacatgattatagaagtattttttcat |
239 |
Q |
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| T |
35428473 |
tcgtttttaattcacatgattatagaagtattttttcat |
35428435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 35419534 - 35419314
Alignment:
| Q |
5 |
aaactatttcaagatacatctattttgtttcgaggattctcc-cacaaaattaccatcagaaaattatttgtttaaaaataaattaattgtgacccattg |
103 |
Q |
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| T |
35419534 |
aaactattttaagatagatctattttgtttcgaggtttctccacacaaaattaccaataaaaaattatttgtttaaaaataaatcaattgtgacccattg |
35419435 |
T |
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| Q |
104 |
--tgtgnnnnnnnagataaactaatgagacaatttcacctctagctcttcatggaatgtcaatggtcataataggtttggtttgattctcatttaggtgt |
201 |
Q |
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| T |
35419434 |
tgtgtgattttttatacaaaataattagacaatttcacct----cacttcatggaatgtcaatggtcaaaataacattggtttgattctcatttaggtgt |
35419339 |
T |
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| Q |
202 |
cgtttttaattcacatgattataga |
226 |
Q |
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| T |
35419338 |
cgtttttaattcacatgattctaga |
35419314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 16436406 - 16436312
Alignment:
| Q |
123 |
taatgagacaatttcacctctagctcttcatggaatgtcaatggtcataataggtttggtttgattctcatttaggtgtcgtttttaattcacatgatt |
221 |
Q |
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| T |
16436406 |
taatgagacaatttcac----acctctttatggaatgtcattggtcaaagtaggtatggtttgcttcttctttaggtgtggtatttaattcgcatgatt |
16436312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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