View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_low_5 (Length: 507)
Name: NF4426_low_5
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 11 - 491
Target Start/End: Original strand, 4711797 - 4712273
Alignment:
| Q |
11 |
caaaggacgaggaaaaggccaattcaaaaaatcaaaacaataaatcagatcaattcataagatactttatcccaaacaaaactcaaaatgttcaattttg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
4711797 |
caaaggacgaggaaaaggccaattcaaaaaatcaaaacaataaatcagatcaattcataagatactttatcccaaacaca-ctcaaaatgttcaattttg |
4711895 |
T |
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| Q |
111 |
ttagtaaaataaaaaatacaatattgaatttgcaattataaagcacagacaccggacacaaacacgtccagacacacgttgacacatataataatttaaa |
210 |
Q |
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| T |
4711896 |
ttagtaaaataaaaaatacaatattgaatttgcaattataaagcacagacaccggacacaaacacgtccagacacacgttgacacata--ataatttaaa |
4711993 |
T |
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| Q |
211 |
agtggcataattcaatgtattgtgtaagcatccgacactgtggtgtgcaactgtcggatactgacacatatcggacaccaaacaggccttcaaacagaat |
310 |
Q |
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| T |
4711994 |
agtggcataattcaatgtattgtgtaagcgtccgacactgtggtgtgcaactgtcggatactgacacatatcggacaccaaacaggccttcaaacagaat |
4712093 |
T |
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| Q |
311 |
ttgaaaaaccctacttagtttcggtgacaaaaattgaacaaaactaaaaagcagttcaaatcactatcaaactacagtaacaagtataattgaacaaaat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4712094 |
ttgaaaaaccctacttagtttcggtgacaaaaattgaacaaaactaaaaagcagttcaaatcactatc-aactacagtaacaagtataattgaacaaaat |
4712192 |
T |
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| Q |
411 |
tgaaattatatacttatctctctaaacaagaaaagattaacaaacataaccgaaacagattcaaattcacacagcatatat |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4712193 |
tgaaattatatacttatctctctaaacaagaaaagattaacacacataaccgaaacagattcaaattcacacagcatatat |
4712273 |
T |
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