View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_low_51 (Length: 245)
Name: NF4426_low_51
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 38259153 - 38258931
Alignment:
| Q |
18 |
attttagctaaaactggatttgcttttaaagaatgctcgtatgcaatccaattgtgttcagacacatattttagtatctcataaagtgtccaaccctgca |
117 |
Q |
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| T |
38259153 |
attttagctaaaactggatttgcttttagagaatgctcgtatgcaattcaattgtgttcaggcacatattttagtatctcataaagtgtccaaccctgca |
38259054 |
T |
|
| Q |
118 |
ttacaagaccctattcagttttcaccttcttccatacatatacatgacataaaatacactagattcatttcaaccattttctccatccgtctttttgtgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38259053 |
ttacaagaccctattcagttttcaccttcttccatacatatacgtgacataaaatacactagattcatttcaaccattttctccatccgtctttttgtgt |
38258954 |
T |
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| Q |
218 |
ggttgtttgttttcctttctgtg |
240 |
Q |
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|||||||||||||||||| |||| |
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| T |
38258953 |
ggttgtttgttttcctttttgtg |
38258931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 38238993 - 38238814
Alignment:
| Q |
18 |
attttagctaaaactggatttgcttttaaagaatgctcgtatgcaatccaattgtgttcagacacatattttagtatctcataaagtgtccaaccctgca |
117 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| ||||| || ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| | |
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| T |
38238993 |
attttagctaaaactggatttgctttcagagattgctcataggcaatccaattgtgttcaggcacatatttcagtatctcataaagtgtccaaccctgaa |
38238894 |
T |
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| Q |
118 |
ttacaagaccctattcagttttcaccttcttccatacatatacatgacataaaatacactagattcatttcaaccattttctcc |
201 |
Q |
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||| | |||||| |||||||||| |||||||||| |||| ||| ||||||||||||||||| ||||||||| |||||| |
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| T |
38238893 |
ttatgaaaccctaatcagttttcaacttcttccatt----tacaatacagaaaatacactagattcaattcaaccatcttctcc |
38238814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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