View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_low_55 (Length: 238)
Name: NF4426_low_55
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 35428984 - 35429203
Alignment:
| Q |
1 |
ttgtataacaaaaccatcaccaaaaggcaaattacttttctacttctacctcatacttacttcaaagcttgatcactcattcatggagtcctcctccttt |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35428984 |
ttgtataacaaaatcatcaccaaaaggcaaattacttttctacttctacctcatacttacttcaaagcttgatcactcattcatggagtcctcctccttt |
35429083 |
T |
|
| Q |
101 |
gacctaactgtgactcccatccttaaaccaatccaacccctgtcactagaaaatccttttttggatggttttttctccattcattttcattacaacctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35429084 |
gacctaactgtgactcccatccttaaaccaatccaacccctgtcactagaaaatccttttttggatggttttttctccattcattttcattacaacctct |
35429183 |
T |
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| Q |
201 |
taactatttcatccacatcc |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
35429184 |
taactatttcatccacatcc |
35429203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 35419908 - 35420064
Alignment:
| Q |
64 |
aaagcttgatcactcattcatggagtcctcctcctttgacctaactgtgactcccatccttaaaccaatccaacccctgtcactagaaaatccttttttg |
163 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||| ||||||||||| || | |
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| T |
35419908 |
aaagcttgatcactcatacatggagtcctcctcctttgacctaagtgtgtctccaatccttaaaccaatccaacccctgtcaccagaaaatccttcttcg |
35420007 |
T |
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| Q |
164 |
gatggttttttctccattcattttcattacaacctcttaactatttcatccacatcc |
220 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35420008 |
gatggttttttctccattcattttcattacaaccacttaactatttcatccacatcc |
35420064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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