View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_low_58 (Length: 236)
Name: NF4426_low_58
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 35970719 - 35970501
Alignment:
| Q |
1 |
gcgttgcagcactgaagctcatggttttttcttctatattttctttcattatcatcagactcttacaatctaccatttcgttacatgtaaattcatgata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35970719 |
gcgttgcagcactgaagctcatggttttttcttctatattttctttcattatcatcagactcttacaatctaccatttcgttacatgtaaattcatgata |
35970620 |
T |
|
| Q |
101 |
agcttgatgttaaactgtttttgttcagtctaaaggttgttgaataaggtataatagacatgtgttgaaggcaaaagtgtggcgagtgctcacttaaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35970619 |
agcttgatgttaaactgtttttgttcagtctaaaggttgttgaataaggtataatggacatgtgttgaaggcaaaagtgtggcgagtgctcacttaaatt |
35970520 |
T |
|
| Q |
201 |
ttcaagtaaggcatattta |
219 |
Q |
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||||||||||||||||||| |
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| T |
35970519 |
ttcaagtaaggcatattta |
35970501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 9212751 - 9212570
Alignment:
| Q |
1 |
gcgttgcagcactgaagctcatggttttttcttctatattttctttcattatcatcagactcttacaatctaccatttcgttacatgtaaattcatgata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9212751 |
gcgttgcagcactgaagctcatggttttttcttctatatttcctttcattatcatctgactcttacaatctaccttttcgttacatgtaaattcatgatt |
9212652 |
T |
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| Q |
101 |
agcttgatgttaaactgtttttgttcagtctaaaggttgttgaataaggtataatagacatgtgttgaaggcaaaagtgtgg |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
9212651 |
agcttgatgttaaactgtttttgttcagtctaaaggttgttgaataaggtataatggatatgtgttgaaggcaaaagtgtgg |
9212570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 6601152 - 6601080
Alignment:
| Q |
116 |
tgtttttgttcagtctaaaggttgttgaataaggtataatagacatgtgttgaaggcaaaagtgtggcgagtg |
188 |
Q |
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|||||||||| |||| |||| ||||||||| ||||||||| ||| ||| ||||||||||||| ||||| |||| |
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| T |
6601152 |
tgtttttgttaagtcaaaagattgttgaatgaggtataatggacttgtattgaaggcaaaagcgtggctagtg |
6601080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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