View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_low_6 (Length: 491)
Name: NF4426_low_6
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 175 - 471
Target Start/End: Complemental strand, 2244628 - 2244336
Alignment:
| Q |
175 |
atcaatgctgaatatacctactaacaaacttatccaagatcgatgaaggtgaaaagaggtacatagtggacaagatttctgaagacattcttagttcttt |
274 |
Q |
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| T |
2244628 |
atcaatgctgaatatacctactaacaaacttatccaagat----gaaggtgaaaagaggtacatagtggacaagatttctgaagacattcttagttcttt |
2244533 |
T |
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| Q |
275 |
taaatttaattcattcaagaattgatgatgactcaatgatagctcgctcttgttggagagcagaagataaaaagatttttgtataattgcatcaacatgg |
374 |
Q |
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| T |
2244532 |
taaatttaattcattcaagaattgatgatgactcaatgatagctcgctcttgttggagagcagaagataaaaagatttttgtataattgcatcaacatgg |
2244433 |
T |
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| Q |
375 |
ctacagtagaacgtaagcattattacatttcttaatgaagaagacaaatcaattacttcacatataaaatctacaacctaagattcacttaagtgta |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2244432 |
ctacagtagaacgtaagcattattacatttcttaatgaagaagacaaatcaattacttcacatatataatctacaacctaagattcacttaagtgta |
2244336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 2244745 - 2244629
Alignment:
| Q |
29 |
catgggttgtgcgggtggcggtttgaacgggtggtaagcgactcaaatacttcacacac--gttcgatctctgacttttccgtatgaaaaaatctgattt |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2244745 |
catgggttgtgcgggtggcggtttgaacgggtggtaagcgactcaaatacttcacacacacgttcgatctctgacttttccgtatgaaaaaatctgattt |
2244646 |
T |
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| Q |
127 |
acagaggagaatatatc |
143 |
Q |
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||| ||||||||||||| |
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| T |
2244645 |
acaaaggagaatatatc |
2244629 |
T |
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