View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4426_low_8 (Length: 437)
Name: NF4426_low_8
Description: NF4426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4426_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 52631646 - 52631459
Alignment:
| Q |
18 |
atctatgttatgaactagcatttcatcctgtgtagctcatgtgaaaatcaatattggtggttgttaataccaccgacctgattgagaaatagagtgagga |
117 |
Q |
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| T |
52631646 |
atctttgttatgaactagcatttcatccggtgtagctcatgtgaaaatcaatattggtggttgttaataccaccaacctgattgagaaatagagtgagga |
52631547 |
T |
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| Q |
118 |
ctaacagagc-annnnnnnnnnnggtttatgttgtgtttgagttatgtggaatgaaggaatgacatagttttcaaagctaaggaaaat |
204 |
Q |
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| T |
52631546 |
ctaccaaagctttttttttttttggtttatgttgtgtttgagttatgtggaatgaaggaatgacatagttttcaaagctaaggaaaat |
52631459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 205 - 422
Target Start/End: Complemental strand, 52627363 - 52627150
Alignment:
| Q |
205 |
atataattcagcatatgtttgataaaggtaagttacattcaatttcatggttgaaaacttataatatcaatcttagtttaaactatcatatatatgtgat |
304 |
Q |
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| T |
52627363 |
atataattcaccatatgtttgataaagtcaagttactttcactttgatggttgaaaacttataatatcgattttggtttaaactatcatat----gtgat |
52627268 |
T |
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| Q |
305 |
ggttgttnnnnnnnncaaagcaatannnnnnnaatataccgattgttggtttttgaagtgatccaatgacaaaactggtgtatatatagttttttacttt |
404 |
Q |
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| T |
52627267 |
ggttgttaaaaaaaacaaagcaatatttttttaatataccgattgttggtttttgaagtgatccaatgacaaaactggtgtatatatagttttttacttt |
52627168 |
T |
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| Q |
405 |
tatattatttgttctccc |
422 |
Q |
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| T |
52627167 |
tatattatttgttctccc |
52627150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 295
Target Start/End: Original strand, 24838436 - 24838587
Alignment:
| Q |
143 |
ttatgttgtgtttgagttatgtggaatga-aggaatgacatagttttcaaagctaaggaaaatatataattcagcatatgtttgataaaggtaagttaca |
241 |
Q |
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| T |
24838436 |
ttatgttgtgtttgggttatgtggaatgagaggaaaaatagagtttttaaggctaaggaaa--acacaattcatcagatgttagataaagtcaaattaca |
24838533 |
T |
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| Q |
242 |
ttcaatttcatggttgaaaacttataatatcaatcttagtttaaactatcatat |
295 |
Q |
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| T |
24838534 |
ttcattttggtggttgaaagcttataatgtcaatcttgggttaaactctcatat |
24838587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 143 - 295
Target Start/End: Complemental strand, 18186919 - 18186768
Alignment:
| Q |
143 |
ttatgttgtgtttgagttatgtggaatgaa-ggaatgacatagttttcaaagctaaggaaaatatataattcagcatatgtttgataaaggtaagttaca |
241 |
Q |
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||||||||||||||||||||||||||||| ||||| | | || |||||| ||||||||||| | | ||||| || ||||| ||||||| |||||||| |
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| T |
18186919 |
ttatgttgtgtttgagttatgtggaatgagcggaataatagaggtttcaaggctaaggaaaacaca--attcaccagatgttcgataaagtcaagttaca |
18186822 |
T |
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| Q |
242 |
ttcaatttcatggttgaaaacttataatatcaatcttagtttaaactatcatat |
295 |
Q |
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| T |
18186821 |
ttcattttggtggttgaaagcttataatctcaatcttggtttaaactctcatat |
18186768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 295
Target Start/End: Complemental strand, 15143106 - 15142955
Alignment:
| Q |
143 |
ttatgttgtgtttgagttatgtggaatgaa-ggaatgacatagttttcaaagctaaggaaaatatataattcagcatatgtttgataaaggtaagttaca |
241 |
Q |
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|||||||||||||||||||||||||| || ||||| ||| ||||||||| || ||||||| | | ||||| | ||||| ||||||| |||||||| |
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| T |
15143106 |
ttatgttgtgtttgagttatgtggaaggagcggaataacagagttttcaaggccaaggaaaccaca--attcacgagatgttagataaagtcaagttaca |
15143009 |
T |
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| Q |
242 |
ttcaatttcatggttgaaaacttataatatcaatcttagtttaaactatcatat |
295 |
Q |
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|||| ||| ||||| ||| |||||||| |||||||| ||||||||| |||||| |
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| T |
15143008 |
ttcattttggtggttaaaagcttataatgtcaatcttggtttaaactctcatat |
15142955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 28350205 - 28350268
Alignment:
| Q |
234 |
aagttacattcaatttcatggttgaaaacttataatatcaatcttagtttaaactatcatatat |
297 |
Q |
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| T |
28350205 |
aagttacattcattttgatggttgaaaacttataatgtcaattttggtttaaactctcatatat |
28350268 |
T |
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