View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4427-Insertion-1 (Length: 1101)
Name: NF4427-Insertion-1
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4427-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 587; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 253 - 934
Target Start/End: Original strand, 39384901 - 39385596
Alignment:
| Q |
253 |
agctagtttatgacccaatgaaattatttaggtttaaatgtgattttagtacatgcatgatgcatatatacattttttgctttcagttcatgtagaatat |
352 |
Q |
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| T |
39384901 |
agctagtttatgacccaatgaaattatttaggtttaaatgtgattttagtacatgcatgatgcatatatacattttttgctttcagttcatgtagaatat |
39385000 |
T |
|
| Q |
353 |
tttctttgtttttattagctctgtaacaccaacatctctgatggaaactgtgtttggtgtccgacattgacacatgtcattacgttcaattgattcattt |
452 |
Q |
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| T |
39385001 |
tttctttgtttttattagctctgtaacaccaacatttctcatggaaactgtgtttggtgtctgacattgacacatgtcattacggtcaattgattcattt |
39385100 |
T |
|
| Q |
453 |
taggtcagtgtcgtgtccggtgtcggtgtctgtgt------ttgtaccaatatttcatacttgttagtacttgcaaatataccagttctgctattagtac |
546 |
Q |
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| T |
39385101 |
taggtcagtgtcgtgtccggtgtcggtgtctgtgtctgtgtttgtaccaatatttcatacttgttagtacttgcaaatataccagttctgctattagtac |
39385200 |
T |
|
| Q |
547 |
ttggtgttttgttgttttggttattgaaattagtcattgtaataataccaatttcaatatgaatcaattttgcaactaaaaacaaaacaagaaggaccaa |
646 |
Q |
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| T |
39385201 |
ttggtgttttgttgttttggttattgaaattagtcattgtaataataccaatttcaatatgtatcaattttgcaactaaaaacaaaacaagaaggaccaa |
39385300 |
T |
|
| Q |
647 |
aaggaaagttgtata---gctaggactagtatttttacaaggacaatttgcatatttaagccaaatatttattggaattgttaattatgattgttgtttg |
743 |
Q |
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| T |
39385301 |
aaggaaagttgtatatttgctagtactagtatttttacaaggacaatttgcatatttaagccaaatatttattgtaattgttaattatgattgttgtttg |
39385400 |
T |
|
| Q |
744 |
actatatccatttatgaaatctgggtgtttttgttgttgttaactgcagagtacaagtttgaagctggtttgtccaatgatgaccgtcgttttgcacatt |
843 |
Q |
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| T |
39385401 |
actatatccatttatgaaatctgggtgtttttgttgttgttaactgcagagtacaagtttgaagctggtttgtccaatgatgaccgtcgttttgcacatt |
39385500 |
T |
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| Q |
844 |
tattggccc-aaaaatggggtttaagtct-aaagttatgggcgagtgagtg-taaggacagcacaattcttc-atgg-ataattggtaaaggaaga |
934 |
Q |
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| T |
39385501 |
tattggcccaaaaaatggggtttaagtctaaaagttatgggtgagtgagtgttaaggacagcacaattcttcaatggaataattggtaaaggaaga |
39385596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 7 - 145
Target Start/End: Original strand, 39384655 - 39384794
Alignment:
| Q |
7 |
atctaccaggcgtcgaataattcgaactttggaattttttcaatcttctgatgaagaaggtacacttacccttttgcttttttcaccgttttatgaacaa |
106 |
Q |
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| T |
39384655 |
atctaccaggcgtcgaataattcgaactttggaatcttttcaatcttctgatgaagaaggtacacttacccttttgcttttttcaccgttttatgaacaa |
39384754 |
T |
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| Q |
107 |
aatactatatggcctgttttca-ttttttcgatggaaatt |
145 |
Q |
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| T |
39384755 |
aatattatatggcctgttttcatttttttcgatggaaatt |
39384794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 678 - 713
Target Start/End: Complemental strand, 26051497 - 26051462
Alignment:
| Q |
678 |
ttacaaggacaatttgcatatttaagccaaatattt |
713 |
Q |
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| T |
26051497 |
ttacaaggacaatttgcatatttaagcctaatattt |
26051462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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