View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4427-Insertion-2 (Length: 573)
Name: NF4427-Insertion-2
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4427-Insertion-2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 33 - 298
Target Start/End: Original strand, 48568644 - 48568909
Alignment:
| Q |
33 |
ttgttatcaagatatttaagtttaatttttcatgtatccttcagtatttaaggatgtcttcttagaaatgctatacatgtgtcagttctaacttggaaat |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
48568644 |
ttgttatcaagatatttaagtttaatttttcatgtatccttcagtatttaaggatgtattcttagaaatgctatacatgtgtcagttttaacttggaaat |
48568743 |
T |
|
| Q |
133 |
acacttatgcaagagcaggcggaaggccattcctcatcttgtctcctagataatagtcaacgctaatattatttcagtcaattttgctagacaaattaat |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48568744 |
acacttatgcaagagcaggcggaaggccattcctcatcttgtctcctagataatagtcaacgctaatattatttcagtcaattttgctagacaaattaat |
48568843 |
T |
|
| Q |
233 |
taggccatttccttaatccctgttagttttttaaagaactgaacttgtcttgacataattgctgcg |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48568844 |
taggccatttccttaatccctgttagttttttaaagaactgaacttgtcttgacataattgctgcg |
48568909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 301 - 453
Target Start/End: Original strand, 48568936 - 48569090
Alignment:
| Q |
301 |
ttctttaggtcactgcaaagagctc--gacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggcattttc |
398 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48568936 |
ttctttaggtcactgcaaagagctcttgacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggcattttc |
48569035 |
T |
|
| Q |
399 |
cagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattcattgtgg |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48569036 |
cagagaaaccttatgaatcagaggaaaccatgcgtaaggtgaacattcattgtgg |
48569090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 512 - 572
Target Start/End: Original strand, 48569141 - 48569201
Alignment:
| Q |
512 |
gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacct |
572 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48569141 |
gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacct |
48569201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 303 - 446
Target Start/End: Complemental strand, 10822347 - 10822202
Alignment:
| Q |
303 |
ctttaggtcactgcaaagagctc--gacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggcattttcca |
400 |
Q |
| |
|
|||||||||||| ||||| |||| ||||||||||| ||||||||||||| ||| ||| | ||||||||||| || || || |||||||||||||||||| |
|
|
| T |
10822347 |
ctttaggtcactacaaagggctcttgacagaagactttaccttcttctctttggtgatgcttatggggctccaagtggaaagcctgtgtggcattttcca |
10822248 |
T |
|
| Q |
401 |
gagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc |
446 |
Q |
| |
|
|| ||| ||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
10822247 |
gaaaaagtatatgaatcagaggaaactatgcgtaaggtgaacattc |
10822202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 302 - 446
Target Start/End: Original strand, 36145048 - 36145194
Alignment:
| Q |
302 |
tctttaggtcactgcaaagagctc--gacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggcattttcc |
399 |
Q |
| |
|
||||||||||||| ||||| |||| || |||||||| ||||||||||||| ||| ||| | ||||||||||| || || || ||||||||||||||||| |
|
|
| T |
36145048 |
tctttaggtcactacaaagggctcttgatagaagactttaccttcttctctttggtgatgcttatggggctccaagtggaaagcctgtgtggcattttcc |
36145147 |
T |
|
| Q |
400 |
agagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc |
446 |
Q |
| |
|
||| ||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
36145148 |
agaaaaagtatatgaatcagaggataccatgcgtaaggtgaacattc |
36145194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 570
Target Start/End: Complemental strand, 10821937 - 10821885
Alignment:
| Q |
518 |
ttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatac |
570 |
Q |
| |
|
||||||||||| || ||||| |||||||||||| |||||||||| || ||||| |
|
|
| T |
10821937 |
ttgcagtgtgcagaatctgccttgaaatcagtcttaggagatctttcgaatac |
10821885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University