View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4427_high_11 (Length: 355)
Name: NF4427_high_11
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4427_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 37563169 - 37563489
Alignment:
| Q |
18 |
ggagtaatcatatc--aatagaaattttaattacaatgattcaaattgtgagcgatatatggttcaaggtaaccccactgtgggttggccttgtggtgtt |
115 |
Q |
| |
|
|||||||||||||| | | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37563169 |
ggagtaatcatatctcagtggaaattttaattacaatgattcaaattgtgatcgatatatggttcaaggtaaccccactgtgggttggccttgtggtgtt |
37563268 |
T |
|
| Q |
116 |
gacttaagactttggagtgtgatccccataaggtattgggttcaattccttttgttgtcaatttcagtggtctagtccatatctctggcttaaaattggg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37563269 |
gacttaagactttggagtgtgatccccataaggtattgggttcaattcctttcgttgtcaatttcagtggtctagtccatatctctggcttaaaattgtg |
37563368 |
T |
|
| Q |
216 |
ctccacaagtggacgattggattggaccccttggataaatcggtccttaggctggacagtgagttttcaaaagnnnnnnngtagggctcaaggttttaag |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||| | ||||| |
|
|
| T |
37563369 |
ctccacaagtggacgattggattggaccccttggataaattggtccttaggctggaaagtgagttttcaaaagaaaaaaagtagggctcaa--tgttaag |
37563466 |
T |
|
| Q |
316 |
caattgccaatgtcattttgttt |
338 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
37563467 |
caattgccaatgtcattttgttt |
37563489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 6691618 - 6691578
Alignment:
| Q |
96 |
tgggttggccttgtggtgttgacttaagactttggagtgtg |
136 |
Q |
| |
|
||||||||||| ||||||||||||| |||| |||||||||| |
|
|
| T |
6691618 |
tgggttggcctggtggtgttgactttagaccttggagtgtg |
6691578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University