View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4427_high_12 (Length: 355)
Name: NF4427_high_12
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4427_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 3 - 337
Target Start/End: Original strand, 3088182 - 3088517
Alignment:
| Q |
3 |
tgaggatatgtgtgttgcaggagctatcaaaaatttcacttctcaactttctcattacaaagagggaacatctgatcgtagatgtaaggaactcatgtct |
102 |
Q |
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| T |
3088182 |
tgaggacatgtgtgttgcaggagctatcaaaaatttcacttctcaactttctcattacaaagagggaacatctgatcgtagatgtaaggaactcatgtct |
3088281 |
T |
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| Q |
103 |
gtcatttattttccctttcagaaatttttagacttattttacttcatgatattaattactggagattttgtt-nnnnnnnnnnntaccattaactggaga |
201 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
3088282 |
gtcattttttttccctttcagaaatttttagacttattttacttcatgatattaattactggagattttgttaaaaaaaaaaaatactattaactggaga |
3088381 |
T |
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| Q |
202 |
tattgcagataatatgaccgaggcattattgttcttgtcacacttcatgggagatattcaccaggtttgtctaaagatttttaaaatttcttttatcata |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3088382 |
tattgcagataatatgaccgaggcattattgttcttgtcacacttcatgggagatattcaccaggtttgtctaaagatttttaaaatttcttttatcata |
3088481 |
T |
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| Q |
302 |
ttactccctttgtcttatcatagatatctttcattt |
337 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
3088482 |
ttactccctttgtcttatcatagatatctttcattt |
3088517 |
T |
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