View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4427_high_14 (Length: 336)

Name: NF4427_high_14
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4427_high_14
NF4427_high_14
[»] chr3 (17 HSPs)
chr3 (66-318)||(50346309-50346566)
chr3 (11-74)||(53255276-53255339)
chr3 (5-70)||(6128498-6128562)
chr3 (24-76)||(1807437-1807489)
chr3 (12-71)||(17256570-17256629)
chr3 (12-74)||(54476042-54476104)
chr3 (11-72)||(32831161-32831222)
chr3 (11-73)||(53254963-53255025)
chr3 (11-76)||(32831480-32831545)
chr3 (12-84)||(29918112-29918184)
chr3 (12-84)||(29967265-29967337)
chr3 (16-76)||(54477326-54477386)
chr3 (12-60)||(55228059-55228107)
chr3 (25-75)||(46336047-46336097)
chr3 (11-72)||(37755189-37755250)
chr3 (12-76)||(43001877-43001941)
chr3 (11-71)||(51453544-51453603)
[»] chr4 (23 HSPs)
chr4 (1-74)||(41148542-41148615)
chr4 (1-74)||(53578897-53578970)
chr4 (7-73)||(5547613-5547679)
chr4 (11-73)||(53831152-53831214)
chr4 (5-74)||(41148164-41148233)
chr4 (11-70)||(5548005-5548064)
chr4 (22-77)||(6033906-6033961)
chr4 (12-74)||(12893215-12893277)
chr4 (12-86)||(38828495-38828569)
chr4 (12-73)||(30064002-30064063)
chr4 (11-76)||(19938578-19938643)
chr4 (11-72)||(33641852-33641913)
chr4 (11-74)||(30064352-30064415)
chr4 (11-70)||(47742596-47742655)
chr4 (12-78)||(1186653-1186719)
chr4 (24-78)||(2016250-2016304)
chr4 (12-78)||(9592383-9592449)
chr4 (16-70)||(37831595-37831649)
chr4 (15-80)||(3369840-3369905)
chr4 (25-74)||(29344548-29344596)
chr4 (33-74)||(35830319-35830360)
chr4 (12-60)||(31761855-31761903)
chr4 (11-75)||(53831312-53831375)
[»] chr1 (27 HSPs)
chr1 (5-87)||(12075259-12075341)
chr1 (5-82)||(12074947-12075024)
chr1 (8-74)||(3815045-3815111)
chr1 (11-73)||(7196676-7196738)
chr1 (12-74)||(37696531-37696593)
chr1 (23-72)||(6129245-6129294)
chr1 (15-72)||(37008218-37008275)
chr1 (5-73)||(2350082-2350150)
chr1 (16-76)||(4476198-4476258)
chr1 (1-69)||(23953092-23953160)
chr1 (25-73)||(46895437-46895485)
chr1 (15-74)||(367175-367234)
chr1 (11-78)||(40876997-40877064)
chr1 (12-74)||(35580921-35580983)
chr1 (38-75)||(366884-366921)
chr1 (25-74)||(41915788-41915837)
chr1 (11-74)||(6129618-6129682)
chr1 (11-75)||(46895792-46895856)
chr1 (12-79)||(21258913-21258980)
chr1 (12-74)||(3814759-3814821)
chr1 (12-70)||(6912433-6912491)
chr1 (12-74)||(26811452-26811514)
chr1 (11-73)||(40876700-40876762)
chr1 (26-71)||(4474757-4474802)
chr1 (16-73)||(14979057-14979114)
chr1 (16-73)||(49695350-49695407)
chr1 (22-74)||(7764443-7764495)
[»] chr8 (30 HSPs)
chr8 (5-78)||(755898-755971)
chr8 (5-74)||(756103-756172)
chr8 (5-74)||(2802994-2803063)
chr8 (5-74)||(14507948-14508017)
chr8 (11-74)||(17512096-17512159)
chr8 (11-68)||(1003463-1003520)
chr8 (11-76)||(14170419-14170484)
chr8 (1-70)||(26889633-26889702)
chr8 (11-75)||(35795583-35795647)
chr8 (12-75)||(45309574-45309637)
chr8 (5-70)||(2802651-2802716)
chr8 (25-74)||(26889292-26889341)
chr8 (11-74)||(1003797-1003859)
chr8 (5-76)||(11289293-11289363)
chr8 (24-83)||(12278825-12278884)
chr8 (5-71)||(4461676-4461742)
chr8 (38-76)||(8409484-8409522)
chr8 (12-70)||(23936282-23936340)
chr8 (32-70)||(29196635-29196673)
chr8 (12-74)||(31947853-31947915)
chr8 (5-78)||(6041443-6041516)
chr8 (5-78)||(6045080-6045153)
chr8 (12-73)||(20788034-20788095)
chr8 (11-76)||(23475621-23475686)
chr8 (12-77)||(44807327-44807392)
chr8 (11-60)||(45163712-45163761)
chr8 (33-77)||(18093352-18093396)
chr8 (22-78)||(29340763-29340819)
chr8 (24-60)||(33895628-33895664)
chr8 (11-71)||(35795219-35795279)
[»] chr5 (12 HSPs)
chr5 (1-77)||(42586329-42586405)
chr5 (5-74)||(42585985-42586054)
chr5 (11-74)||(6464327-6464390)
chr5 (25-70)||(13428143-13428188)
chr5 (24-77)||(128250-128303)
chr5 (11-75)||(36361413-36361477)
chr5 (12-75)||(38163668-38163731)
chr5 (11-74)||(20126437-20126500)
chr5 (11-74)||(20126670-20126735)
chr5 (12-78)||(38973323-38973388)
chr5 (31-84)||(4886239-4886292)
chr5 (12-72)||(42981503-42981563)
[»] chr2 (24 HSPs)
chr2 (5-75)||(8030124-8030194)
chr2 (11-72)||(17850486-17850547)
chr2 (11-74)||(14816049-14816112)
chr2 (12-84)||(36286112-36286184)
chr2 (11-76)||(12802456-12802521)
chr2 (12-73)||(20480077-20480138)
chr2 (5-73)||(4856709-4856776)
chr2 (12-80)||(39374382-39374450)
chr2 (12-75)||(28719315-28719378)
chr2 (12-74)||(52292-52354)
chr2 (12-78)||(19889470-19889536)
chr2 (12-74)||(21633320-21633382)
chr2 (12-74)||(23048289-23048351)
chr2 (12-75)||(2755202-2755265)
chr2 (11-74)||(8740153-8740216)
chr2 (15-70)||(23993915-23993970)
chr2 (11-73)||(14815698-14815760)
chr2 (12-73)||(11363882-11363943)
chr2 (25-70)||(12948892-12948937)
chr2 (12-77)||(21024291-21024356)
chr2 (25-70)||(29370719-29370764)
chr2 (16-60)||(23686817-23686861)
chr2 (47-75)||(35500038-35500066)
chr2 (12-76)||(36286406-36286470)
[»] chr7 (18 HSPs)
chr7 (5-74)||(282847-282916)
chr7 (9-74)||(327428-327493)
chr7 (10-74)||(29933524-29933588)
chr7 (11-75)||(43092032-43092096)
chr7 (11-74)||(9191686-9191749)
chr7 (11-74)||(46199052-46199115)
chr7 (11-77)||(6385800-6385866)
chr7 (11-73)||(10691298-10691360)
chr7 (26-78)||(9477128-9477180)
chr7 (11-75)||(43078055-43078119)
chr7 (11-78)||(7873883-7873950)
chr7 (15-74)||(26787922-26787981)
chr7 (26-73)||(35793375-35793422)
chr7 (12-74)||(1449982-1450044)
chr7 (15-73)||(24679100-24679158)
chr7 (12-74)||(47258962-47259024)
chr7 (12-73)||(42436829-42436890)
chr7 (15-71)||(9477446-9477502)
[»] scaffold0468 (1 HSPs)
scaffold0468 (11-73)||(10351-10413)
[»] chr6 (9 HSPs)
chr6 (22-70)||(7504885-7504933)
chr6 (26-75)||(12798725-12798774)
chr6 (12-78)||(4792291-4792357)
chr6 (12-73)||(28574559-28574620)
chr6 (25-73)||(30369784-30369832)
chr6 (12-75)||(4037036-4037099)
chr6 (26-76)||(9070136-9070186)
chr6 (12-78)||(12203887-12203953)
chr6 (11-68)||(10582150-10582206)
[»] scaffold0019 (1 HSPs)
scaffold0019 (12-76)||(122582-122646)
[»] scaffold0016 (1 HSPs)
scaffold0016 (12-71)||(201246-201305)
[»] scaffold0028 (1 HSPs)
scaffold0028 (12-73)||(31979-32040)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 66 - 318
Target Start/End: Complemental strand, 50346566 - 50346309
Alignment:
Q  66 attaagcctttataaaattcaaaatgtatgcaaagttgtagaattattgatttctcatgt-----cttttctgattttctcacgtttaatcgatatttaa 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     || ||||||||||||||||||||||||||||||||    
T  50346566 attaagcctttataaaattcaaaatgtatgcaaagttgtagaattattgatttctcatgtgatgtctgttctgattttctcacgtttaatcgatatttaa 50346467  T
Q  161 gaaatggaaagaattgctagtcgcgttcgcgttaagggaataaaatttcagtcactgccaaagtgttgagaagagcagccgaaggttgaggaaccaaagg 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50346466 gaaatggaaagaattgctagtcgcgttcgcgttaagggaataaaatttcagtcactgccaaagtgttgagaagagcagccgaaggtcgaggaaccaaagg 50346367  T
Q  261 aagagcgagcatacataagcataaccacaatgctcagtatatggatcttttgttgatg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50346366 aagagcgagcatacataagcataaccacaatgctcagtatatggatcttttgttgatg 50346309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 53255276 - 53255339
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    |||||||||| ||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||    
T  53255276 tttagttagggggccaaaatcgcaacttcttaaaacataggaggccaaaactgctattaagcct 53255339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 6128498 - 6128562
Alignment:
Q  5 aattattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaa 70  Q
    |||||||||||||||| || |||||| ||||| ||||||||||||| |||||||||||||||||||    
T  6128498 aattattttagttagg-ggtcaaaatcgcaacttcttaaaatatagtgggccaaaactgctattaa 6128562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 1807437 - 1807489
Alignment:
Q  24 ccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagccttt 76  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||||||||||    
T  1807437 ccaaaatcgcaaattcttaaaatatagggggccaaaactgctattaagccttt 1807489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 17256629 - 17256570
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaag 71  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||||||| ||| ||||||    
T  17256629 ttagttagggggccaaaattgcaacttcttgaaatatagggggccaaaagtgcaattaag 17256570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 54476104 - 54476042
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    ||||||||| || |||||| ||||| ||||||||||||||||||||||| ||| |||||||||    
T  54476104 ttagttagggggtcaaaatcgcaacttcttaaaatatagggggccaaaagtgcaattaagcct 54476042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 32831222 - 32831161
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagc 72  Q
    |||||||| || |||||||||| ||| |||| ||| ||||||||||||||||||||||||||    
T  32831222 tttagttaagaagccaaaattgtaacttcttgaaacatagggggccaaaactgctattaagc 32831161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 53255025 - 53254963
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcc 73  Q
    |||||||||  ||||||||| ||||| |||| ||| ||||||||||||||||| |||||||||    
T  53255025 tttagttagagggccaaaatcgcaacttcttgaaacatagggggccaaaactgttattaagcc 53254963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 32831480 - 32831545
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagccttt 76  Q
    |||||||||| | ||||||||||||| | || ||| ||||||||||||||||  ||||||||||||    
T  32831480 tttagttaggggaccaaaattgcaacttttttaaacatagggggccaaaactattattaagccttt 32831545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 29918184 - 29918112
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttataaaatt 84  Q
    ||||||||| ||| ||||||||||| | | |||| |||||||||||||  ||| |||||||||| ||||||||    
T  29918184 ttagttagggggctaaaattgcaacttttgaaaagatagggggccaaagatgcaattaagccttgataaaatt 29918112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 29967337 - 29967265
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttataaaatt 84  Q
    ||||||||| ||| ||||||||||| | | |||| |||||||||||||  ||| |||||||||| ||||||||    
T  29967337 ttagttagggggctaaaattgcaacttttgaaaagatagggggccaaagatgcaattaagccttgataaaatt 29967265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 54477326 - 54477386
Alignment:
Q  16 ttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagccttt 76  Q
    |||||||||||||||  |||| |||||||| |||||||||||||| ||| ||||| |||||    
T  54477326 ttaggaggccaaaatcacaacttcttaaaacatagggggccaaaagtgcaattaatccttt 54477386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 55228059 - 55228107
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaa 60  Q
    ||||||||| | ||||||| ||||| |||||||||||||||||||||||    
T  55228059 ttagttaggggtccaaaatcgcaacttcttaaaatatagggggccaaaa 55228107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 46336047 - 46336097
Alignment:
Q  25 caaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctt 75  Q
    |||||| ||||  ||||||||||||||||  ||||||||||||||||||||    
T  46336047 caaaatcgcaatttcttaaaatataggggatcaaaactgctattaagcctt 46336097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 37755189 - 37755250
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagc 72  Q
    |||||||||| ||| ||||| ||||| || | ||| |||||||||||||||||| |||||||    
T  37755189 tttagttagggggctaaaatcgcaacttcatgaaacatagggggccaaaactgcaattaagc 37755250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 43001877 - 43001941
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagccttt 76  Q
    ||||||||| ||||||||| ||||  | | |||| |||||||||||||| ||| |||||||||||    
T  43001877 ttagttagggggccaaaatcgcaatttttaaaaagatagggggccaaaagtgcaattaagccttt 43001941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 51453603 - 51453544
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaag 71  Q
    |||||||||| || |||||| ||||| |||||||| ||||||| | |||||||||||||||    
T  51453603 tttagttagggggtcaaaatcgcaacttcttaaaacataggggtc-aaaactgctattaag 51453544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 41148542 - 41148615
Alignment:
Q  1 atcaaattattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    |||||||||||||||||||| | |||||||  |||| |||||||||||||||||||||||||||||||||||||    
T  41148542 atcaaattattttagttaggggaccaaaatcacaacttcttaaaatatagggggccaaaactgctattaagcct 41148615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 53578897 - 53578970
Alignment:
Q  1 atcaaattattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    |||||||||||||||||| | ||| ||||| ||||| |||||||| ||||||||||||||| ||||||||||||    
T  53578897 atcaaattattttagttaaggggctaaaatcgcaacttcttaaaacatagggggccaaaacggctattaagcct 53578970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 5547679 - 5547613
Alignment:
Q  7 ttattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcc 73  Q
    ||||||||||||||||||||||||  |||| |||| ||||| || ||||||||||||||||||||||    
T  5547679 ttattttagttaggaggccaaaatctcaacttcttgaaatacagagggccaaaactgctattaagcc 5547613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 53831214 - 53831152
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcc 73  Q
    |||||||||| | ||||||| ||||| |||||||| |||||||||||||||||||||||||||    
T  53831214 tttagttaggggaccaaaatcgcaacttcttaaaacatagggggccaaaactgctattaagcc 53831152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 41148233 - 41148164
Alignment:
Q  5 aattattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    |||||||||||||||| ||| ||||| | ||| |||| ||| ||||||||||||||||||||||||||||    
T  41148233 aattattttagttagggggctaaaatcggaacttcttgaaacatagggggccaaaactgctattaagcct 41148164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 5548005 - 5548064
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaa 70  Q
    |||| ||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||    
T  5548005 tttaattaggaggccaaaatcgcaacttcttaaaacataggaggccaaaactgctattaa 5548064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 6033906 - 6033961
Alignment:
Q  22 ggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagccttta 77  Q
    ||||||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||    
T  6033906 ggccaaaatcgcaacttcttaaaatatagggggccaaaaatgcgattaagccttta 6033961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 12893215 - 12893277
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    ||||||||| ||||||||||||||||| | |||| |||||||||||||| ||| |||||||||    
T  12893215 ttagttagggggccaaaattgcaacatttgaaaagatagggggccaaaagtgcaattaagcct 12893277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 38828569 - 38828495
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttataaaattca 86  Q
    ||||||| ||| ||||||| ||||| |||||||| |||| ||||||||| ||| ||||||||| |||||||||||    
T  38828569 ttagttatgagtccaaaatcgcaacttcttaaaacatagagggccaaaagtgcaattaagcctatataaaattca 38828495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 30064063 - 30064002
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcc 73  Q
    ||||||||| | ||||||| ||||| |||||||| |||||||||||||||| ||||||||||    
T  30064063 ttagttaggggaccaaaatcgcaacttcttaaaacatagggggccaaaacttctattaagcc 30064002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 19938578 - 19938643
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagccttt 76  Q
    |||||||||| ||||||||| ||||||| | |||||||||| || ||||| ||| |||||||||||    
T  19938578 tttagttagggggccaaaatcgcaacatttaaaaatataggaggtcaaaagtgcaattaagccttt 19938643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 33641913 - 33641852
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagc 72  Q
    ||||||||||||| |||||| ||||  |||||||| ||| |||||||||||||| |||||||    
T  33641913 tttagttaggaggtcaaaatcgcaatttcttaaaacataaggggccaaaactgcaattaagc 33641852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 30064352 - 30064415
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    ||||||||||  |||||||| ||||| ||||||||  ||||| ||||||||| |||||||||||    
T  30064352 tttagttagggagccaaaatcgcaacttcttaaaacttagggagccaaaactactattaagcct 30064415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 47742596 - 47742655
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaa 70  Q
    |||||||||| ||| ||||| | ||| |||||||| |||||||| |||||||||||||||    
T  47742596 tttagttagggggctaaaatcgtaacttcttaaaacatagggggtcaaaactgctattaa 47742655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 1186719 - 1186653
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttat 78  Q
    ||||||||| ||||||||| ||||| | | ||||  ||||||||||||| ||| |||||||||||||    
T  1186719 ttagttagggggccaaaatcgcaacttttaaaaagttagggggccaaaagtgcaattaagcctttat 1186653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 2016304 - 2016250
Alignment:
Q  24 ccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttat 78  Q
    ||||||||||||| | | |||| |||||||||||||| ||| |||||||||||||    
T  2016304 ccaaaattgcaacttttgaaaagatagggggccaaaagtgcaattaagcctttat 2016250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 9592383 - 9592449
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttat 78  Q
    |||||||| |||||||||| ||||| | | |||| |||||||||||||| ||| |||||||| ||||    
T  9592383 ttagttagaaggccaaaatcgcaacttttgaaaagatagggggccaaaagtgcaattaagccattat 9592449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 37831649 - 37831595
Alignment:
Q  16 ttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaa 70  Q
    ||||| ||||||||| ||||| ||||||||  |||||||| ||||||||||||||    
T  37831649 ttagggggccaaaatcgcaacttcttaaaacttagggggctaaaactgctattaa 37831595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 3369905 - 3369840
Alignment:
Q  15 gttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttataa 80  Q
    |||||| ||||||||| ||||| |||| | |  |||||||| ||||||| ||||||||||||||||    
T  3369905 gttagggggccaaaatcgcaacttcttgatacttagggggcaaaaactgatattaagcctttataa 3369840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 29344548 - 29344596
Alignment:
Q  25 caaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    |||||||||||| |||| ||||||| ||||||||||||| ||||||||||    
T  29344548 caaaattgcaacttcttgaaatata-ggggccaaaactgatattaagcct 29344596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 35830319 - 35830360
Alignment:
Q  33 caacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    |||| |||| ||||||||| ||||||||||||||||||||||    
T  35830319 caacttcttgaaatataggaggccaaaactgctattaagcct 35830360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 31761855 - 31761903
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaa 60  Q
    ||||||||| ||||||||| | ||| |||| ||||||||||||||||||    
T  31761855 ttagttagggggccaaaatcgtaacttcttgaaatatagggggccaaaa 31761903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 53831312 - 53831375
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctt 75  Q
    |||| |||||||| |||||| ||||| |||||||| ||||||| | |||||||||| ||||||||    
T  53831312 tttaattaggaggtcaaaatcgcaacttcttaaaacataggggac-aaaactgctagtaagcctt 53831375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 12075259 - 12075341
Alignment:
Q  5 aattattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttataaaattcaa 87  Q
    |||||||||||||||| ||||||||| ||||| |||  ||| ||||||||||||||||||||||||||||||  |||||||||    
T  12075259 aattattttagttagggggccaaaatcgcaacttctgtaaacatagggggccaaaactgctattaagccttttaaaaattcaa 12075341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 12075024 - 12074947
Alignment:
Q  5 aattattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttataaaa 82  Q
    |||||||||||||||| || |||||| ||||| |||| ||| |||||| |||||||||||||||||| |||| |||||    
T  12075024 aattattttagttagggggtcaaaatcgcaacttcttgaaacatagggagccaaaactgctattaagtctttttaaaa 12074947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 3815045 - 3815111
Alignment:
Q  8 tattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    ||||||||||||| ||||||||| ||||| |||| ||| |||||||  |||||||||||||||||||    
T  3815045 tattttagttagggggccaaaatcgcaacttcttgaaacataggggttcaaaactgctattaagcct 3815111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 7196738 - 7196676
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcc 73  Q
    ||||||||| |||||||||| ||||| |||| |||||||| ||| ||||||||||||||||||    
T  7196738 tttagttagcaggccaaaatcgcaacttcttgaaatatagagggtcaaaactgctattaagcc 7196676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 37696531 - 37696593
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    ||||||| ||||||||||||||||| | | ||||||||||||||||||| ||| |||||||||    
T  37696531 ttagttatgaggccaaaattgcaacttttgaaaatatagggggccaaaagtgcgattaagcct 37696593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 6129294 - 6129245
Alignment:
Q  23 gccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagc 72  Q
    |||||||||||||| |||||||||||||||| |||||||||| |||||||    
T  6129294 gccaaaattgcaacttcttaaaatataggggaccaaaactgcaattaagc 6129245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 37008275 - 37008218
Alignment:
Q  15 gttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagc 72  Q
    |||||| ||||||||| ||||| |||| ||| ||||||||||||||||||||||||||    
T  37008275 gttagggggccaaaatcgcaacttcttgaaacatagggggccaaaactgctattaagc 37008218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 2350082 - 2350150
Alignment:
Q  5 aattattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcc 73  Q
    |||||||||||||||| || |||||| ||||| |||||||| |||| || ||||||||| |||||||||    
T  2350082 aattattttagttagggggtcaaaatcgcaacttcttaaaacatagaggaccaaaactgttattaagcc 2350150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 4476198 - 4476258
Alignment:
Q  16 ttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagccttt 76  Q
    ||||| ||||||||| ||||| ||||||||||||| ||||||||| ||| |||||||||||    
T  4476198 ttagggggccaaaatcgcaacttcttaaaatatagagggccaaaagtgcaattaagccttt 4476258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 23953092 - 23953160
Alignment:
Q  1 atcaaattattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctatta 69  Q
    |||||||||||||||||  | || |||||| ||||| |||| ||| |||||||||||||||||||||||    
T  23953092 atcaaattattttagtttaggggtcaaaatcgcaacttcttgaaacatagggggccaaaactgctatta 23953160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 46895485 - 46895437
Alignment:
Q  25 caaaattgcaacatcttaaaatatagggggccaaaactgctattaagcc 73  Q
    |||||| ||||| |||| |||||||||||||||||||||||||||||||    
T  46895485 caaaatcgcaacttcttgaaatatagggggccaaaactgctattaagcc 46895437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 367175 - 367234
Alignment:
Q  15 gttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    |||||| ||||||||| ||||| |||| |||||||||||  |||||||||||||||||||    
T  367175 gttagggggccaaaatcgcaacctcttgaaatataggggatcaaaactgctattaagcct 367234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 40876997 - 40877064
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttat 78  Q
    |||||||||| ||||||||| ||||| ||||  || |||||||||||||||||| |||||| ||||||    
T  40876997 tttagttagggggccaaaatcgcaacttcttggaacatagggggccaaaactgcaattaagtctttat 40877064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 35580921 - 35580983
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    ||||||||||||||||||| ||||| | | |||| |||||||||||||| ||| |||||||||    
T  35580921 ttagttaggaggccaaaatcgcaacttttgaaaaaatagggggccaaaagtgcaattaagcct 35580983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 366921 - 366884
Alignment:
Q  38 tcttaaaatatagggggccaaaactgctattaagcctt 75  Q
    |||||||| |||||||||||||||||||||||||||||    
T  366921 tcttaaaacatagggggccaaaactgctattaagcctt 366884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 41915788 - 41915837
Alignment:
Q  25 caaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    |||||| ||||| |||| ||||||||||| ||||||||||||||||||||    
T  41915788 caaaatcgcaacttcttgaaatataggggaccaaaactgctattaagcct 41915837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 6129618 - 6129682
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatata-gggggccaaaactgctattaagcct 74  Q
    |||||||||| ||| ||||| |||||||||||||| ||| ||||| ||||||||| |||||||||    
T  6129618 tttagttagggggcaaaaatcgcaacatcttaaaacataggggggtcaaaactgcaattaagcct 6129682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 46895792 - 46895856
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctt 75  Q
    |||||||| | || |||||| ||||| |||| ||| |||||||||||||||||| ||||||||||    
T  46895792 tttagttatggggtcaaaatcgcaacttcttgaaacatagggggccaaaactgcaattaagcctt 46895856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 21258980 - 21258913
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttata 79  Q
    ||||||||||| ||||||| ||||| |||||||| ||||| || ||||| ||| ||||||||| ||||    
T  21258980 ttagttaggagtccaaaatcgcaacttcttaaaacataggtggtcaaaagtgcaattaagcctatata 21258913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 3814821 - 3814759
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    ||||||||| |||||||||  |||| |||| ||| ||||||||| ||| ||||||||||||||    
T  3814821 ttagttagggggccaaaatcacaacttcttgaaacatagggggctaaatctgctattaagcct 3814759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 6912433 - 6912491
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaa 70  Q
    ||||||||||||||||||| ||||| | | |||| |||||||||||||| ||| |||||    
T  6912433 ttagttaggaggccaaaatcgcaacttttcaaaagatagggggccaaaagtgcaattaa 6912491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 26811514 - 26811452
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    ||||||||||||||||||| ||||| | | |||| |||||||| ||||| ||| |||||||||    
T  26811514 ttagttaggaggccaaaatcgcaacttttgaaaagatagggggtcaaaagtgcaattaagcct 26811452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 40876762 - 40876700
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcc 73  Q
    |||||||||| ||| |||||  |||| |||| |||||||||||| ||||||||| ||||||||    
T  40876762 tttagttaggtggctaaaatcacaacttcttgaaatatagggggtcaaaactgcaattaagcc 40876700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 4474802 - 4474757
Alignment:
Q  26 aaaattgcaacatcttaaaatatagggggccaaaactgctattaag 71  Q
    ||||||||||| |||||||| |||||||||||||| ||| ||||||    
T  4474802 aaaattgcaacttcttaaaacatagggggccaaaagtgcaattaag 4474757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 14979057 - 14979114
Alignment:
Q  16 ttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcc 73  Q
    ||||||||||||||||||||| || | |||  |||||||| |||||| ||||||||||    
T  14979057 ttaggaggccaaaattgcaacttcatgaaagttagggggcgaaaacttctattaagcc 14979114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 49695407 - 49695350
Alignment:
Q  16 ttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcc 73  Q
    ||||| ||||||||| ||||| ||||||||||||| || |||||| ||| ||||||||    
T  49695407 ttagggggccaaaatcgcaacttcttaaaatatagaggaccaaaagtgcaattaagcc 49695350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 7764443 - 7764495
Alignment:
Q  22 ggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    ||||||||||||||| | | |||| |||||||||||||| ||| |||||||||    
T  7764443 ggccaaaattgcaacttttgaaaagatagggggccaaaagtgcaattaagcct 7764495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 755971 - 755898
Alignment:
Q  5 aattattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttat 78  Q
    |||||||||||||||| ||||||||| ||||| |||| ||| |||| |||||||||||||||||||||||||||    
T  755971 aattattttagttagggggccaaaatcgcaacttcttgaaacatagagggccaaaactgctattaagcctttat 755898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 756103 - 756172
Alignment:
Q  5 aattattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    |||||||||||||||  ||||||||| ||||| |||||||| |||||| |||||||||||||||||||||    
T  756103 aattattttagttagagggccaaaatcgcaacttcttaaaacatagggagccaaaactgctattaagcct 756172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 2802994 - 2803063
Alignment:
Q  5 aattattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    |||||||||||||||| ||||||||||||||| |||  ||| |||||||  |||||||||||||||||||    
T  2802994 aattattttagttagggggccaaaattgcaacttctgtaaacataggggatcaaaactgctattaagcct 2803063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 14507948 - 14508017
Alignment:
Q  5 aattattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    |||||||||||||||||||| ||||| |||||| ||  || |||||||||||||||||| ||||||||||    
T  14507948 aattattttagttaggaggctaaaatcgcaacaactgtaattatagggggccaaaactgatattaagcct 14508017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 17512159 - 17512096
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    |||||||||| ||||||||| ||||| |||| |||||||||||||||||||||| |||| ||||    
T  17512159 tttagttagggggccaaaatcgcaacttcttgaaatatagggggccaaaactgcaattatgcct 17512096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 1003520 - 1003463
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctatt 68  Q
    |||||||| | ||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  1003520 tttagttatggggccaaaatcgcaacttcttaaaatataggaggccaaaactgctatt 1003463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 14170484 - 14170419
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagccttt 76  Q
    |||| ||||| ||||||||| ||||| |||||||| |||||||| ||||||||| |||||||||||    
T  14170484 tttaattagggggccaaaatcgcaacttcttaaaacatagggggtcaaaactgcaattaagccttt 14170419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 26889633 - 26889702
Alignment:
Q  1 atcaaattattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaa 70  Q
    |||||||||||||||||||| || |||||| ||||| |||||||| ||||| | | ||||||||||||||    
T  26889633 atcaaattattttagttagggggtcaaaatcgcaacttcttaaaacataggagactaaaactgctattaa 26889702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 35795583 - 35795647
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctt 75  Q
    |||||||||| |||||||||  |||| |||| ||| |||||||||||||||||| ||||||||||    
T  35795583 tttagttagggggccaaaatcacaacttcttgaaacatagggggccaaaactgcaattaagcctt 35795647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 45309574 - 45309637
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctt 75  Q
    ||||||||  ||||||||||||||| |||| |||||||| ||||||||| ||| ||||||||||    
T  45309574 ttagttagagggccaaaattgcaacttcttgaaatatagagggccaaaagtgcaattaagcctt 45309637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 2802716 - 2802651
Alignment:
Q  5 aattattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaa 70  Q
    |||||||||||||| | | ||||||| ||||| |||||| | |||||||| |||||||||||||||    
T  2802716 aattattttagttatgggtccaaaatcgcaacttcttaatacatagggggtcaaaactgctattaa 2802651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 26889341 - 26889292
Alignment:
Q  25 caaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    |||||||||||| |||  ||| ||||||||||||||||||||||||||||    
T  26889341 caaaattgcaacttctggaaacatagggggccaaaactgctattaagcct 26889292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 1003797 - 1003859
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    ||||||||||  |||||||||||||| |||| ||| |||||||| |||||||| ||||||||||    
T  1003797 tttagttagggagccaaaattgcaacttcttgaaacataggggg-caaaactgttattaagcct 1003859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 11289293 - 11289363
Alignment:
Q  5 aattattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagccttt 76  Q
    |||||||| ||||||| | ||| ||| ||||| |||| ||| ||||||||||||| ||||||||||||||||    
T  11289293 aattatttaagttagg-gaccagaatcgcaacttcttgaaacatagggggccaaagctgctattaagccttt 11289363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 12278884 - 12278825
Alignment:
Q  24 ccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttataaaat 83  Q
    ||||||| ||||| |||||||| |||||||||||||| | | |||||||||| |||||||    
T  12278884 ccaaaatcgcaacttcttaaaacatagggggccaaaagtacaattaagccttaataaaat 12278825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 4461742 - 4461676
Alignment:
Q  5 aattattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaag 71  Q
    |||||||||||||||| | ||||||| ||||  | || ||| ||| |||||||||||||||||||||    
T  4461742 aattattttagttaggggaccaaaatcgcaaatttttgaaacataaggggccaaaactgctattaag 4461676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 8409522 - 8409484
Alignment:
Q  38 tcttaaaatatagggggccaaaactgctattaagccttt 76  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  8409522 tcttagaacatagggggccaaaactgctattaagccttt 8409484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 23936340 - 23936282
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaa 70  Q
    ||||||||| ||||||||| ||||| |||| ||| |||||||||||||| ||| |||||    
T  23936340 ttagttagggggccaaaatcgcaacttcttgaaacatagggggccaaaagtgcaattaa 23936282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 29196635 - 29196673
Alignment:
Q  32 gcaacatcttaaaatatagggggccaaaactgctattaa 70  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  29196635 gcaacttcttaaaatatagggggccaaaactgttattaa 29196673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 31947915 - 31947853
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    ||||||||| ||||||||| ||||| | | |||| |||||||||||||| ||| |||||||||    
T  31947915 ttagttagggggccaaaatcgcaacttttgaaaagatagggggccaaaagtgcaattaagcct 31947853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 6041443 - 6041516
Alignment:
Q  5 aattattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttat 78  Q
    |||||||||||||||| |  |||||| ||||| |||  ||| |||||||||||||| | ||||||| |||||||    
T  6041443 aattattttagttaggggatcaaaatcgcaacttctataaacatagggggccaaaaatactattaaacctttat 6041516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 6045080 - 6045153
Alignment:
Q  5 aattattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttat 78  Q
    |||||||||||||||| |  |||||| ||||| |||  ||| |||||||||||||| | ||||||| |||||||    
T  6045080 aattattttagttaggggatcaaaatcgcaacttctataaacatagggggccaaaaatactattaaacctttat 6045153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 20788095 - 20788034
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcc 73  Q
    ||||||||  ||||||||||||||| | || ||| |||||||||||||| ||| ||||||||    
T  20788095 ttagttagagggccaaaattgcaacttattgaaacatagggggccaaaagtgcaattaagcc 20788034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 23475686 - 23475621
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagccttt 76  Q
    |||||||| | || ||||||  |||| |||| ||| |||||||||||||||||| |||||||||||    
T  23475686 tttagttaaggggtcaaaatcacaacttcttgaaacatagggggccaaaactgcaattaagccttt 23475621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 44807327 - 44807392
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagccttta 77  Q
    ||||||||| ||||||||| ||||| | | |||| |||||||| ||||| ||| ||||||||||||    
T  44807327 ttagttagggggccaaaatcgcaacttttgaaaagatagggggtcaaaagtgcaattaagccttta 44807392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 45163712 - 45163761
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaa 60  Q
    |||||||||| ||||||||| ||||| |||| ||| ||||||||||||||    
T  45163712 tttagttagggggccaaaatcgcaacttcttgaaacatagggggccaaaa 45163761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 18093352 - 18093396
Alignment:
Q  33 caacatcttaaaatatagggggccaaaactgctattaagccttta 77  Q
    |||| ||||||||| |||||||| |||||||||||||||| ||||    
T  18093352 caacttcttaaaatttagggggctaaaactgctattaagcattta 18093396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 29340819 - 29340763
Alignment:
Q  22 ggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttat 78  Q
    ||||||||| ||||  | || ||| |||||||||||||||||||||||| |||||||    
T  29340819 ggccaaaatcgcaaattatttaaacatagggggccaaaactgctattaaacctttat 29340763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 33895628 - 33895664
Alignment:
Q  24 ccaaaattgcaacatcttaaaatatagggggccaaaa 60  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  33895628 ccaaaattgcaacattttaaaatatagggggcgaaaa 33895664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 35795279 - 35795219
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaag 71  Q
    ||||| |||| || |||||||||||| | || ||| |||||||||||||||||| ||||||    
T  35795279 tttagctagggggtcaaaattgcaactttttgaaacatagggggccaaaactgcaattaag 35795219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 42586329 - 42586405
Alignment:
Q  1 atcaaattattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagccttta 77  Q
    |||||||||||||||||||| ||||||||| ||||| |||  ||| || ||||||||||||||||||||||||||||    
T  42586329 atcaaattattttagttagggggccaaaatcgcaacttctgtaaacatggggggccaaaactgctattaagccttta 42586405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 42586054 - 42585985
Alignment:
Q  5 aattattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    |||||||||||||||| || |||||| ||||| |||| ||| ||||||||||||||||||||||||||||    
T  42586054 aattattttagttagggggtcaaaatcgcaacttcttgaaacatagggggccaaaactgctattaagcct 42585985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 6464327 - 6464390
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    |||||||||| ||||||||| ||||| |||| ||| ||||||||||||||||||||||||||||    
T  6464327 tttagttagggggccaaaatcgcaacttcttgaaacatagggggccaaaactgctattaagcct 6464390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 13428143 - 13428188
Alignment:
Q  25 caaaattgcaacatcttaaaatatagggggccaaaactgctattaa 70  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  13428143 caaaattgcaacttcttaaaatatagggggccaaaactgctattaa 13428188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 128303 - 128250
Alignment:
Q  24 ccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagccttta 77  Q
    ||||||||||||| |||| ||| |||||||| ||||||||||||||||||||||    
T  128303 ccaaaattgcaacttcttgaaacatagggggtcaaaactgctattaagccttta 128250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 36361413 - 36361477
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctt 75  Q
    |||||||| | ||||||||| ||||| ||||||||||||||||||||||||  | ||||||||||    
T  36361413 tttagttaaggggccaaaatcgcaacttcttaaaatatagggggccaaaacgccaattaagcctt 36361477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 38163668 - 38163731
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctt 75  Q
    ||||||||| ||||||||| ||||| |||||||||||||| |||||||| ||| ||||| ||||    
T  38163668 ttagttagggggccaaaatcgcaacttcttaaaatataggaggccaaaagtgcaattaaacctt 38163731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 20126500 - 20126437
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    |||||||||| || ||||||  |||| |||| ||| |||||||||||||||| |||||||||||    
T  20126500 tttagttagggggtcaaaatcacaacttcttgaaacatagggggccaaaactcctattaagcct 20126437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 20126670 - 20126735
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggg--gccaaaactgctattaagcct 74  Q
    |||||||||| || |||||| ||||| |||||||| |||||||  ||||||||| |||||||||||    
T  20126670 tttagttagggggtcaaaatcgcaacttcttaaaacatagggggggccaaaactcctattaagcct 20126735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 38973388 - 38973323
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttat 78  Q
    ||||||||| |||||||||  |||  |||||||| |||||||||||||| ||| |||||||||||||    
T  38973388 ttagttagggggccaaaatc-caatttcttaaaacatagggggccaaaagtgcaattaagcctttat 38973323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 4886292 - 4886239
Alignment:
Q  31 tgcaacatcttaaaatatagggggccaaaactgctattaagcctttataaaatt 84  Q
    |||||| |||||||| ||||||| |||||| ||| |||||||||||||| ||||    
T  4886292 tgcaacttcttaaaacataggggaccaaaagtgcaattaagcctttatataatt 4886239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 42981563 - 42981503
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagc 72  Q
    ||||||||||||  ||||| ||||| | |||||||||||||| |||||| ||| |||||||    
T  42981563 ttagttaggaggttaaaatcgcaactttttaaaatataggggaccaaaaatgcaattaagc 42981503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 8030194 - 8030124
Alignment:
Q  5 aattattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctt 75  Q
    |||||||||||||||| | ||||||||||||| |||  ||| |||||||||||||||||||||||||||||    
T  8030194 aattattttagttaggggaccaaaattgcaacttctgtaaacatagggggccaaaactgctattaagcctt 8030124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 17850486 - 17850547
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagc 72  Q
    |||||||||||||||||||| ||||| |||||||| |||||||||||||||| |||||||||    
T  17850486 tttagttaggaggccaaaatcgcaacttcttaaaacatagggggccaaaactactattaagc 17850547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 14816049 - 14816112
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    |||||||||| ||||||||| ||||| |||| ||| ||||||||||||||||||||||||||||    
T  14816049 tttagttagggggccaaaatcgcaacttcttgaaacatagggggccaaaactgctattaagcct 14816112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 36286184 - 36286112
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttataaaatt 84  Q
    ||||||||| ||||||||| ||||| | | ||||||||| ||||||||| ||| |||||||||||||||||||    
T  36286184 ttagttagggggccaaaatcgcaacttttgaaaatatagagggccaaaagtgcaattaagcctttataaaatt 36286112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 12802456 - 12802521
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagccttt 76  Q
    ||||||||| || ||||||| ||||| |||| ||| |||||| |||||||||||||||||||||||    
T  12802456 tttagttagaagaccaaaatcgcaacttcttgaaacatagggagccaaaactgctattaagccttt 12802521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 20480138 - 20480077
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcc 73  Q
    ||||||||| ||||||||||||||| | | ||||||||||||||||||| ||| ||||||||    
T  20480138 ttagttagggggccaaaattgcaacttttaaaaatatagggggccaaaagtgcaattaagcc 20480077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 4856776 - 4856709
Alignment:
Q  5 aattattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcc 73  Q
    |||||||||||||||| || |||||| ||||| |||| ||| ||| |||||||||||||||||||||||    
T  4856776 aattattttagttagg-ggtcaaaatcgcaacttcttgaaacataaggggccaaaactgctattaagcc 4856709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 39374382 - 39374450
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttataa 80  Q
    ||||||||| || |||||||||||| | | ||||||||||||| ||||| ||| |||||||||||||||    
T  39374382 ttagttagggggtcaaaattgcaacttttgaaaatatagggggtcaaaagtgcaattaagcctttataa 39374450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 28719378 - 28719315
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctt 75  Q
    ||||||||| ||||||||| ||||| |||||||| ||||||||||||||  || ||||||||||    
T  28719378 ttagttagggggccaaaatcgcaacttcttaaaacatagggggccaaaagggcaattaagcctt 28719315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 52292 - 52354
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    ||||||||| ||||||||| ||||  |||||||| |||||||||||||| ||| |||||||||    
T  52292 ttagttagggggccaaaatcgcaaattcttaaaacatagggggccaaaagtgcaattaagcct 52354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 19889470 - 19889536
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttat 78  Q
    ||||||||||||||||||| ||||| | | |||| ||| |||||||||| ||| |||||||||||||    
T  19889470 ttagttaggaggccaaaatcgcaacttttgaaaagatatggggccaaaagtgcaattaagcctttat 19889536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 21633320 - 21633382
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    ||||||||| | ||||| ||||||| |||||||| |||||||||||||| ||| |||||||||    
T  21633320 ttagttaggggtccaaagttgcaacttcttaaaacatagggggccaaaagtgcaattaagcct 21633382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 23048351 - 23048289
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    ||||||||| ||||||||| ||||| |||||||||||| |||||||||| ||| ||| |||||    
T  23048351 ttagttagggggccaaaatcgcaacttcttaaaatataaggggccaaaaatgcaatttagcct 23048289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 2755202 - 2755265
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctt 75  Q
    ||||||||| ||||||||| ||||| | | |||| |||||||||||||| ||| ||||||||||    
T  2755202 ttagttagggggccaaaatcgcaacttttgaaaagatagggggccaaaagtgcaattaagcctt 2755265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 8740216 - 8740153
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    |||||||||  || |||||| ||||| |||||||||||||||||  |||||||| |||||||||    
T  8740216 tttagttagagggtcaaaatcgcaacttcttaaaatatagggggttaaaactgcaattaagcct 8740153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 23993915 - 23993970
Alignment:
Q  15 gttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaa 70  Q
    |||||| ||||||||||||||| |||||| |  ||||| |||||||||||||||||    
T  23993915 gttagggggccaaaattgcaacttcttaatacttagggagccaaaactgctattaa 23993970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 14815760 - 14815698
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcc 73  Q
    |||||||| | | ||||||  ||||| |||| ||| |||||||||||||||||||||||||||    
T  14815760 tttagttaagggaccaaaaccgcaacttcttgaaacatagggggccaaaactgctattaagcc 14815698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 11363943 - 11363882
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcc 73  Q
    |||||||||  |||||||| ||||| |||| ||| |||||||||||||| ||| ||||||||    
T  11363943 ttagttagggagccaaaatcgcaacttcttgaaacatagggggccaaaaatgcaattaagcc 11363882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 12948937 - 12948892
Alignment:
Q  25 caaaattgcaacatcttaaaatatagggggccaaaactgctattaa 70  Q
    |||||| ||||| ||||||||| |||||||| ||||||||||||||    
T  12948937 caaaatcgcaacttcttaaaatttagggggctaaaactgctattaa 12948892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 21024356 - 21024291
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagccttta 77  Q
    ||||||| | ||||||||||||||| | | |||| ||| |||||||||| ||| ||||||||||||    
T  21024356 ttagttaaggggccaaaattgcaacttttgaaaaaataaggggccaaaaatgcaattaagccttta 21024291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 29370764 - 29370719
Alignment:
Q  25 caaaattgcaacatcttaaaatatagggggccaaaactgctattaa 70  Q
    |||||| ||||| |||||||| |||||||||||||||| |||||||    
T  29370764 caaaatcgcaacttcttaaaacatagggggccaaaacttctattaa 29370719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 23686817 - 23686861
Alignment:
Q  16 ttaggaggccaaaattgcaacatcttaaaatatagggggccaaaa 60  Q
    ||||||| ||||||| |||||||||||||| ||| ||||||||||    
T  23686817 ttaggagtccaaaatcgcaacatcttaaaacataaggggccaaaa 23686861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 75
Target Start/End: Complemental strand, 35500066 - 35500038
Alignment:
Q  47 atagggggccaaaactgctattaagcctt 75  Q
    |||||||||||||||||||||||||||||    
T  35500066 atagggggccaaaactgctattaagcctt 35500038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 36286406 - 36286470
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagccttt 76  Q
    ||||||||| ||||||||| ||||| | |  ||| |||||||||||||| ||| |||||||||||    
T  36286406 ttagttagggggccaaaatcgcaacttttggaaagatagggggccaaaagtgcaattaagccttt 36286470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 282847 - 282916
Alignment:
Q  5 aattattttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    |||||||||||||||| ||||||||| ||||| |||| ||| ||||| ||||||||||||||||||||||    
T  282847 aattattttagttagggggccaaaatcgcaacttcttgaaacataggaggccaaaactgctattaagcct 282916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 327428 - 327493
Alignment:
Q  9 attttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    |||||||||||| ||||||||| ||||| |||| ||| ||||||||||| ||||||||||||||||    
T  327428 attttagttagggggccaaaatcgcaacttcttgaaacatagggggccacaactgctattaagcct 327493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 29933524 - 29933588
Alignment:
Q  10 ttttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    ||||||||||||||||||||| ||||| |||||||| |||| ||| |||||||| ||||||||||    
T  29933524 ttttagttaggaggccaaaatcgcaacttcttaaaacatagagggtcaaaactgttattaagcct 29933588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 43092032 - 43092096
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctt 75  Q
    |||||||||| ||||||||||| ||| |||| ||| ||||||||||||| |||||||||||||||    
T  43092032 tttagttagggggccaaaattgtaacttcttgaaacatagggggccaaatctgctattaagcctt 43092096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 9191686 - 9191749
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    ||||||||||  | |||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  9191686 tttagttagggagtcaaaattgcaacttcttaaaatataggggatcgaaactgctattaagcct 9191749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 46199115 - 46199052
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    |||| ||||| | ||||||| ||||| ||||||||||||| ||| |||||||||||||||||||    
T  46199115 tttatttaggggaccaaaatcgcaacttcttaaaatatagaggggcaaaactgctattaagcct 46199052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 6385800 - 6385866
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagccttta 77  Q
    |||||||||||| | ||||||||||  |||||||| ||||||| |||||||||| ||||| ||||||    
T  6385800 tttagttaggagactaaaattgcaatttcttaaaacataggggaccaaaactgcaattaaaccttta 6385866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 10691360 - 10691298
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcc 73  Q
    |||||||||| ||||||||| ||||| |||| ||| |||||||||||||| ||| ||||||||    
T  10691360 tttagttagggggccaaaatcgcaacttcttgaaacatagggggccaaaattgcaattaagcc 10691298  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 9477180 - 9477128
Alignment:
Q  26 aaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttat 78  Q
    ||||| ||||| | |||||| |||||||||||||||||||||||| |||||||    
T  9477180 aaaatcgcaactttttaaaacatagggggccaaaactgctattaaacctttat 9477128  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 43078055 - 43078119
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctt 75  Q
    |||| ||||| ||||||||| ||||| |||| ||| | ||||||||||| |||||||||||||||    
T  43078055 tttaattagggggccaaaatcgcaacttcttgaaacagagggggccaaatctgctattaagcctt 43078119  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 7873883 - 7873950
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttat 78  Q
    ||||||||||  ||||||||  |||  |||| ||| |||||||||||||||||| |||||||||||||    
T  7873883 tttagttagggagccaaaatcacaatttcttgaaacatagggggccaaaactgcaattaagcctttat 7873950  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 26787922 - 26787981
Alignment:
Q  15 gttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    |||||||||| |||||  |||| | || |||||||||||||||||||| |||||||||||    
T  26787922 gttaggaggcaaaaatcacaactttttgaaatatagggggccaaaactactattaagcct 26787981  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 35793422 - 35793375
Alignment:
Q  26 aaaattgcaacatcttaaaatatagggggccaaaactgctattaagcc 73  Q
    ||||| ||||| || |||||| ||||||||||||||||||||||||||    
T  35793422 aaaatcgcaacttcctaaaatttagggggccaaaactgctattaagcc 35793375  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 1450044 - 1449982
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    ||||||||| ||||||||||||||| | || ||| ||||| |||||||| ||| |||||||||    
T  1450044 ttagttagggggccaaaattgcaactttttgaaagataggtggccaaaagtgcaattaagcct 1449982  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 24679100 - 24679158
Alignment:
Q  15 gttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcc 73  Q
    |||||| ||||||||| ||||  |||| ||| ||||||||||||||||| |||||||||    
T  24679100 gttagggggccaaaatcgcaatttcttgaaacatagggggccaaaactgttattaagcc 24679158  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 47259024 - 47258962
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcct 74  Q
    ||||||||| ||||||||||||||| | | |||| |||| ||||||||| ||| |||||||||    
T  47259024 ttagttagggggccaaaattgcaacttttgaaaagatagagggccaaaaatgcaattaagcct 47258962  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 42436890 - 42436829
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcc 73  Q
    ||||||||| | ||||||| | ||| |||||||| |||||||||||||| ||| ||||||||    
T  42436890 ttagttaggggtccaaaatcgtaacttcttaaaacatagggggccaaaaatgcaattaagcc 42436829  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 9477446 - 9477502
Alignment:
Q  15 gttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaag 71  Q
    |||||| ||||||||| ||||| | |||||| ||||| || ||||||||||||||||    
T  9477446 gttagggggccaaaatcgcaactttttaaaacataggaggtcaaaactgctattaag 9477502  T

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Target: scaffold0468 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 10413 - 10351
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcc 73  Q
    |||||||||| ||||||||||||||  |||||||| ||||| |||||||||||||||||||||    
T  10413 tttagttagggggccaaaattgcaatttcttaaaacataggaggccaaaactgctattaagcc 10351  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 7504885 - 7504933
Alignment:
Q  22 ggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaa 70  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  7504885 ggccaaaattgcaacttcttgaaatatagggggccaaaactgctattaa 7504933  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 12798774 - 12798725
Alignment:
Q  26 aaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctt 75  Q
    ||||| ||||| |||| |||||||||||||||||||||||||||||||||    
T  12798774 aaaatcgcaacttcttgaaatatagggggccaaaactgctattaagcctt 12798725  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 4792357 - 4792291
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttat 78  Q
    ||||||||  || |||||||||||| |||||||| |||| ||||||||| ||| |||||||||||||    
T  4792357 ttagttagagggtcaaaattgcaacttcttaaaacatagagggccaaaaatgcaattaagcctttat 4792291  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 28574559 - 28574620
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcc 73  Q
    ||||||||| ||||||||| ||||| |||| ||| |||||||||||||| ||| ||||||||    
T  28574559 ttagttagggggccaaaatcgcaacttcttgaaacatagggggccaaaagtgcaattaagcc 28574620  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 30369832 - 30369784
Alignment:
Q  25 caaaattgcaacatcttaaaatatagggggccaaaactgctattaagcc 73  Q
    |||||| ||||| |||||||| ||| |||||||||||||||||||||||    
T  30369832 caaaatcgcaacttcttaaaacataaggggccaaaactgctattaagcc 30369784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 4037099 - 4037036
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctt 75  Q
    ||||||||| ||||||||| ||||| | | |||| |||||||||||||| ||| ||||||||||    
T  4037099 ttagttagggggccaaaatcgcaacttttgaaaagatagggggccaaaagtgcaattaagcctt 4037036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 9070136 - 9070186
Alignment:
Q  26 aaaattgcaacatcttaaaatatagggggccaaaactgctattaagccttt 76  Q
    ||||| ||||| |||| ||| |||||||||||||| |||||||||||||||    
T  9070136 aaaatcgcaacttcttgaaacatagggggccaaaaatgctattaagccttt 9070186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 12203953 - 12203887
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcctttat 78  Q
    ||||||||| || |||||| ||||| |||| ||| |||||||||||||| ||| ||||| |||||||    
T  12203953 ttagttagggggtcaaaatcgcaacttcttgaaacatagggggccaaaagtgcaattaaacctttat 12203887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 10582150 - 10582206
Alignment:
Q  11 tttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctatt 68  Q
    |||||||||| ||||||||| ||||| |||| ||||||| ||||| ||||||||||||    
T  10582150 tttagttagggggccaaaatcgcaacttcttgaaatata-ggggcgaaaactgctatt 10582206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 122582 - 122646
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagccttt 76  Q
    ||||||||||||||||||| ||||| | |  ||| |||||||||||||| ||| |||||||||||    
T  122582 ttagttaggaggccaaaatcgcaacttttggaaagatagggggccaaaagtgcaattaagccttt 122646  T

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Target: scaffold0016 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 201246 - 201305
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaag 71  Q
    ||||||||| ||| ||||| ||||| ||||| ||||||||||||||||| ||| ||||||    
T  201246 ttagttagggggctaaaatcgcaacttcttataatatagggggccaaaagtgcaattaag 201305  T

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Target: scaffold0028 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 32040 - 31979
Alignment:
Q  12 ttagttaggaggccaaaattgcaacatcttaaaatatagggggccaaaactgctattaagcc 73  Q
    ||||||||| ||||||||||||||| | |  ||| |||||||||||||| ||| ||||||||    
T  32040 ttagttagggggccaaaattgcaacttttggaaagatagggggccaaaagtgcaattaagcc 31979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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