View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4427_high_16 (Length: 321)
Name: NF4427_high_16
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4427_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 19689138 - 19689298
Alignment:
| Q |
9 |
gagcagaacctgtgttaagatggatactttaattcaagagaattgccacggctagaatcttccttgcaattggaattgagcagcaatagaaattaataaa |
108 |
Q |
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| T |
19689138 |
gagccgaagctgtgttaagatggatactttaattcaagagaattgccacggctagaatcttccttgcaattggaattgagcagcaatagaaattaataaa |
19689237 |
T |
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| Q |
109 |
gattcggattttgaatgggcacgacaatgaaaataacaagaattggaatcgactgaattgg |
169 |
Q |
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| T |
19689238 |
gattcggattttgaatgggcacgacaatgaaaataacaagaattggaatcgactgaattgg |
19689298 |
T |
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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 19689364 - 19689427
Alignment:
| Q |
235 |
cagtttctgaatcgtnnnnnnnccatacattagcaagcgatttcaaaagaaaataataaaataa |
298 |
Q |
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| T |
19689364 |
cagtttctgaatcgtaaaaaaaccatacattagcaagcgatttcaaaagaaaataataaaataa |
19689427 |
T |
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