View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4427_high_19 (Length: 290)

Name: NF4427_high_19
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4427_high_19
NF4427_high_19
[»] chr1 (3 HSPs)
chr1 (15-273)||(48264248-48264506)
chr1 (229-273)||(44243899-44243943)
chr1 (229-279)||(32962583-32962633)
[»] chr6 (2 HSPs)
chr6 (241-273)||(15522448-15522480)
chr6 (229-273)||(17935755-17935799)
[»] chr4 (4 HSPs)
chr4 (228-279)||(50380826-50380877)
chr4 (229-273)||(9028063-9028107)
chr4 (229-273)||(17948127-17948171)
chr4 (229-273)||(24079831-24079875)
[»] chr8 (1 HSPs)
chr8 (229-279)||(28580964-28581014)
[»] chr7 (4 HSPs)
chr7 (244-273)||(24656996-24657025)
chr7 (230-271)||(38852269-38852310)
chr7 (229-273)||(18773747-18773791)
chr7 (229-273)||(25288690-25288734)
[»] scaffold0352 (1 HSPs)
scaffold0352 (241-273)||(12632-12664)
[»] chr5 (1 HSPs)
chr5 (229-273)||(39980534-39980578)
[»] chr3 (1 HSPs)
chr3 (229-273)||(40520778-40520822)


Alignment Details
Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 48264248 - 48264506
Alignment:
Q  15 attcaaaacttgttaacatacatatatgaagaaaaatgaagattaatagaacactgtttacatttttaatcgtaaaagactaatttatcatnnnnnnnnt 114  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||        |    
T  48264248 attcaaaacttgttaacatacatatataaagaaaaatgaagattaatagaacactgtttacatttttaa-cgtaaaagactaatttatcataaaaaaaat 48264346  T
Q  115 gttaaccatgggcatacattttgggctaaacttcacttttcattcattatgttatttataagtaatactttgatttcgtatttttcttcttcttcatttt 214  Q
    |||||||||||||| | |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48264347 gttaaccatgggcacaaattttgggctaaactatacttttcattcattatgttatttataagtaatactttgatttcgtatttttcttcttcttcatttt 48264446  T
Q  215 gatc-nnnnnnnnnatggtggttgggatttgaactctggaccttacatattttatgcatt 273  Q
    ||||          |||||||||| ||||||||||||||||||| |||||||||||||||    
T  48264447 gatcatttttttttatggtggttgagatttgaactctggaccttgcatattttatgcatt 48264506  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 44243943 - 44243899
Alignment:
Q  229 tggtggttgggatttgaactctggaccttacatattttatgcatt 273  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||    
T  44243943 tggtggttggggtttgaactctggaccttacatatattatgcatt 44243899  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 32962633 - 32962583
Alignment:
Q  229 tggtggttgggatttgaactctggaccttacatattttatgcattcttcat 279  Q
    ||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||    
T  32962633 tggtggtcggggtttgaaccctggaccttgcatattttatgcattgttcat 32962583  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 15522480 - 15522448
Alignment:
Q  241 tttgaactctggaccttacatattttatgcatt 273  Q
    |||||||||||||||||||||||||||||||||    
T  15522480 tttgaactctggaccttacatattttatgcatt 15522448  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 17935799 - 17935755
Alignment:
Q  229 tggtggttgggatttgaactctggaccttacatattttatgcatt 273  Q
    ||||||| ||||||||||| || |||||| |||||||||||||||    
T  17935799 tggtggtcgggatttgaaccctagaccttgcatattttatgcatt 17935755  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 50380826 - 50380877
Alignment:
Q  228 atggtggttgggatttgaactctggaccttacatattttatgcattcttcat 279  Q
    |||||||| | ||||||||||| ||||||||||||| ||||||||| |||||    
T  50380826 atggtggtcgagatttgaactccggaccttacatatattatgcattgttcat 50380877  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 9028063 - 9028107
Alignment:
Q  229 tggtggttgggatttgaactctggaccttacatattttatgcatt 273  Q
    |||||||||||||| |||| |  ||||||||||||||||||||||    
T  9028063 tggtggttgggattcgaaccccagaccttacatattttatgcatt 9028107  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 17948127 - 17948171
Alignment:
Q  229 tggtggttgggatttgaactctggaccttacatattttatgcatt 273  Q
    ||||||| ||| ||||||||| | |||||||||||||||||||||    
T  17948127 tggtggtcggggtttgaactccgaaccttacatattttatgcatt 17948171  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 24079831 - 24079875
Alignment:
Q  229 tggtggttgggatttgaactctggaccttacatattttatgcatt 273  Q
    ||||||| ||| ||||||||| ||||||| |||||||||||||||    
T  24079831 tggtggtcggggtttgaactccggaccttgcatattttatgcatt 24079875  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 28581014 - 28580964
Alignment:
Q  229 tggtggttgggatttgaactctggaccttacatattttatgcattcttcat 279  Q
    ||||||| ||||||||||| | | ||||||||||||||||||||| |||||    
T  28581014 tggtggtcgggatttgaaccccgaaccttacatattttatgcattattcat 28580964  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 273
Target Start/End: Complemental strand, 24657025 - 24656996
Alignment:
Q  244 gaactctggaccttacatattttatgcatt 273  Q
    ||||||||||||||||||||||||||||||    
T  24657025 gaactctggaccttacatattttatgcatt 24656996  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 38852269 - 38852310
Alignment:
Q  230 ggtggttgggatttgaactctggaccttacatattttatgca 271  Q
    |||||||||| |||||| || |||||||||||||||||||||    
T  38852269 ggtggttggggtttgaattccggaccttacatattttatgca 38852310  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 18773747 - 18773791
Alignment:
Q  229 tggtggttgggatttgaactctggaccttacatattttatgcatt 273  Q
    ||||||| ||| ||||||| | |||||||||||||||||||||||    
T  18773747 tggtggtcggggtttgaaccccggaccttacatattttatgcatt 18773791  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 25288734 - 25288690
Alignment:
Q  229 tggtggttgggatttgaactctggaccttacatattttatgcatt 273  Q
    |||||| |||||||||||||| ||||||| ||||| |||||||||    
T  25288734 tggtggctgggatttgaactccggaccttgcatatcttatgcatt 25288690  T

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Target: scaffold0352 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 273
Target Start/End: Original strand, 12632 - 12664
Alignment:
Q  241 tttgaactctggaccttacatattttatgcatt 273  Q
    ||||||||||||||||| |||||||||||||||    
T  12632 tttgaactctggaccttgcatattttatgcatt 12664  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 39980578 - 39980534
Alignment:
Q  229 tggtggttgggatttgaactctggaccttacatattttatgcatt 273  Q
    ||||||| ||| ||||||||| ||||||| |||||||||||||||    
T  39980578 tggtggtcggggtttgaactccggaccttgcatattttatgcatt 39980534  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 40520822 - 40520778
Alignment:
Q  229 tggtggttgggatttgaactctggaccttacatattttatgcatt 273  Q
    ||||||| ||| |||||||| |||||||| |||||||||||||||    
T  40520822 tggtggtcggggtttgaactttggaccttgcatattttatgcatt 40520778  T

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