View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4427_high_2 (Length: 486)

Name: NF4427_high_2
Description: NF4427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4427_high_2
NF4427_high_2
[»] chr7 (7 HSPs)
chr7 (4-470)||(47264836-47265302)
chr7 (4-162)||(47240840-47240998)
chr7 (4-162)||(47300787-47300945)
chr7 (8-120)||(47275408-47275520)
chr7 (4-150)||(47296207-47296353)
chr7 (11-162)||(47255799-47255950)
chr7 (7-162)||(47282148-47282303)
[»] chr3 (1 HSPs)
chr3 (4-169)||(20511842-20512007)
[»] chr5 (2 HSPs)
chr5 (4-162)||(32729505-32729663)
chr5 (382-447)||(781722-781787)
[»] chr8 (3 HSPs)
chr8 (382-439)||(14988128-14988185)
chr8 (382-439)||(14987960-14988017)
chr8 (382-439)||(40155057-40155114)
[»] chr2 (1 HSPs)
chr2 (381-417)||(9740646-9740682)


Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 4 - 470
Target Start/End: Original strand, 47264836 - 47265302
Alignment:
Q  4 tactggtgagggagttatgttcgttgaagctgaagctgatgtaacacttgatgaattcggtgacgctttgcatcccccactcccatgcttcgaagaactt 103  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47264836 tactggcgagggagttatgttcgttgaagctgaagctgatgtaacccttgatgaattcggtgacgctttgcatcccccactcccatgcttcgaagaactt 47264935  T
Q  104 ctatacgatgttccaggatcggaactaattattgaccgtcccattcgactcatacaggtaaagttacgctagtagatgatcaagaaggcctacgtttcaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47264936 ctatacgatgttccaggatcggaactaattattgaccgtcccattcgactcatacaggtaaagttacgctagtagatgatcaagaaggcctacgtttcaa 47265035  T
Q  204 ttatcgcattccaataatttttacgtactcacnnnnnnncttgaataataagtatatactcccttgaacttgaactttctatgttaattacgtatgctaa 303  Q
    ||||||||||||||||||||||||||||||||       ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  47265036 ttatcgcattccaataatttttacgtactcactttttttcttgaataataagcatatactcccttgaacttgaactttctatgttaattacgtatgctaa 47265135  T
Q  304 actgaatagtttacaaacatatatcttgatatgagatttaatatatctgaattattacgtttgagacttttaaatattaacaatatagcatttttaaaaa 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  47265136 actgaatagtttacaaacatatatcttgatatgagatttaatatatctgaatttttacgtttgagacttttaaatatcaacaatatagcatttttaaaaa 47265235  T
Q  404 taaatttgtttaagagtacaactaaaacaatgaaaattcagcccacaaaaaatcgtatatccaattt 470  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47265236 taaatttgtttaagagtacaactaaaataatgaaaattcagcccacaaaaaatcgtatatccaattt 47265302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 162
Target Start/End: Original strand, 47240840 - 47240998
Alignment:
Q  4 tactggtgagggagttatgttcgttgaagctgaagctgatgtaacacttgatgaattcggtgacgctttgcatcccccactcccatgcttcgaagaactt 103  Q
    ||||||||| || || |||||| ||||||||||||||||||||||||||||| |||| ||||| ||| ||||||| ||| |||| |||||| || ||||     
T  47240840 tactggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgctctgcatcctccattcccttgcttccaacaactc 47240939  T
Q  104 ctatacgatgttccaggatcggaactaattattgaccgtcccattcgactcatacaggt 162  Q
     |||||||||||||||| || ||||  |||||||||||| ||||| |||||||||||||    
T  47240940 ttatacgatgttccaggctcagaacatattattgaccgtaccatttgactcatacaggt 47240998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 47300945 - 47300787
Alignment:
Q  4 tactggtgagggagttatgttcgttgaagctgaagctgatgtaacacttgatgaattcggtgacgctttgcatcccccactcccatgcttcgaagaactt 103  Q
    |||||| ||||| || |||||| ||||||||||||||||||||||||||||| |||| ||||| ||  ||||||| ||| |||| |||||| |  ||||     
T  47300945 tactggcgagggtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgccctgcatcctccattcccttgcttccatcaactc 47300846  T
Q  104 ctatacgatgttccaggatcggaactaattattgaccgtcccattcgactcatacaggt 162  Q
    ||||| ||||||| ||| ||||||| |||||| ||||||||||||||||||||||||||    
T  47300845 ctatatgatgttcgaggctcggaacaaattatggaccgtcccattcgactcatacaggt 47300787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 47275408 - 47275520
Alignment:
Q  8 ggtgagggagttatgttcgttgaagctgaagctgatgtaacacttgatgaattcggtgacgctttgcatcccccactcccatgcttcgaagaacttctat 107  Q
    ||||||||||| |||||| ||||||||||| ||||||| |||||||||||||| ||||| ||  ||||||||||| |||| |||||| |||||||  |||    
T  47275408 ggtgagggagtcatgttcattgaagctgaaactgatgttacacttgatgaatttggtgatgcactgcatcccccattcccttgcttccaagaactcatat 47275507  T
Q  108 acgatgttccagg 120  Q
    |||||||||||||    
T  47275508 acgatgttccagg 47275520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 4 - 150
Target Start/End: Complemental strand, 47296353 - 47296207
Alignment:
Q  4 tactggtgagggagttatgttcgttgaagctgaagctgatgtaacacttgatgaattcggtgacgctttgcatcccccactcccatgcttcgaagaactt 103  Q
    ||||||||| || || |||||| ||||||||||||||||||||||||||||| |||| ||||| ||  ||||||| ||| |||| |||||| || ||||     
T  47296353 tactggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgccctgcatcctccattcccttgcttccaacaactc 47296254  T
Q  104 ctatacgatgttccaggatcggaactaattattgaccgtcccattcg 150  Q
    ||||| ||||||||||| ||   || |||||| ||||||||||||||    
T  47296253 ctatatgatgttccaggctcaacacaaattatcgaccgtcccattcg 47296207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 47255799 - 47255950
Alignment:
Q  11 gagggagttatgttcgttgaagctgaagctgatgtaacacttgatgaattcggtgacgctttgcatcccccactcccatgcttcgaagaacttctatacg 110  Q
    ||||| || |||||| ||||||||||||||||| ||||||||||| |||| ||||| ||| |||| || ||| | || |||||| ||||| ||||||  |    
T  47255799 gagggtgtcatgttcattgaagctgaagctgatataacacttgatcaatttggtgatgctctgcaacctccatttccttgcttccaagaaattctatgtg 47255898  T
Q  111 atgttccaggatcggaactaattattgaccgtcccattcgactcatacaggt 162  Q
    |||||||||| || |||   ||||||||||||||||| ||||| ||||||||    
T  47255899 atgttccaggctcagaatatattattgaccgtcccatccgacttatacaggt 47255950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 47282148 - 47282303
Alignment:
Q  7 tggtgagggagttatgttcgttgaagctgaagctgatgtaacacttgatgaattcggtgacgctttgcatcccccactcccatgcttcgaagaacttcta 106  Q
    |||||| || || |||||| |||||||||||||||||||||||||| ||||||| ||||| ||| | ||||||||| |||| |||||| |||||||  ||    
T  47282148 tggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgcttccaagaactcata 47282247  T
Q  107 tacgatgttccaggatcggaactaattattgaccgtcccattcgactcatacaggt 162  Q
    || ||||||||| |  || ||| ||| ||||| | ||| ||||  |||||||||||    
T  47282248 tatgatgttccaagcacgaaacaaatcattgatcatcctattctgctcatacaggt 47282303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 4 - 169
Target Start/End: Original strand, 20511842 - 20512007
Alignment:
Q  4 tactggtgagggagttatgttcgttgaagctgaagctgatgtaacacttgatgaattcggtgacgctttgcatcccccactcccatgcttcgaagaactt 103  Q
    |||||||||||| || |||||| |||||||||||||| |||||||||||||||| || ||||||| ||||||||||||| |||||||| |||| ||||||    
T  20511842 tactggtgagggtgtcatgttcattgaagctgaagctaatgtaacacttgatgactttggtgacggtttgcatcccccattcccatgcgtcgatgaactt 20511941  T
Q  104 ctatacgatgttccaggatcggaactaattattgaccgtcccattcgactcatacaggtaaagtta 169  Q
    ||||||||||||||||  |||| ||||| |||||| |||||||||||||| |||||||| ||||||    
T  20511942 ctatacgatgttccagattcggtactaaatattgatcgtcccattcgacttatacaggtcaagtta 20512007  T

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Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 4 - 162
Target Start/End: Original strand, 32729505 - 32729663
Alignment:
Q  4 tactggtgagggagttatgttcgttgaagctgaagctgatgtaacacttgatgaattcggtgacgctttgcatcccccactcccatgcttcgaagaactt 103  Q
    |||||||||||| ||  ||||| ||||||||||||||||||||||||||||| |||| ||||| ||| ||||||| ||| |||| |||||| || ||||     
T  32729505 tactggtgagggtgtcgtgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgctctgcatcctccattcccttgcttccaacaactc 32729604  T
Q  104 ctatacgatgttccaggatcggaactaattattgaccgtcccattcgactcatacaggt 162  Q
     |||||||||||||||| || ||||  ||||||||||||||||||||||||||||||||    
T  32729605 ttatacgatgttccaggctcagaacatattattgaccgtcccattcgactcatacaggt 32729663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 447
Target Start/End: Complemental strand, 781787 - 781722
Alignment:
Q  382 aacaatatagcatttttaaaaataaatttgtttaagagtacaactaaaacaatgaaaattcagccc 447  Q
    ||||||||||| |||||||||| |||||| ||  | | ||||||| ||| ||||||||||||||||    
T  781787 aacaatatagcgtttttaaaaacaaatttattcgacaatacaactgaaataatgaaaattcagccc 781722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 382 - 439
Target Start/End: Complemental strand, 14988185 - 14988128
Alignment:
Q  382 aacaatatagcatttttaaaaataaatttgtttaagagtacaactaaaacaatgaaaa 439  Q
    ||||||||| |||| ||||||||||||||||||||||||| ||||  |||||||||||    
T  14988185 aacaatataacattcttaaaaataaatttgtttaagagtataactggaacaatgaaaa 14988128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 439
Target Start/End: Complemental strand, 14988017 - 14987960
Alignment:
Q  382 aacaatatagcatttttaaaaataaatttgtttaagagtacaactaaaacaatgaaaa 439  Q
    ||||||||| |||| |||||| ||||||||||| || ||| |||||||| ||||||||    
T  14988017 aacaatataacattcttaaaagtaaatttgtttgagggtataactaaaataatgaaaa 14987960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 439
Target Start/End: Original strand, 40155057 - 40155114
Alignment:
Q  382 aacaatatagcatttttaaaaataaatttgtttaagagtacaactaaaacaatgaaaa 439  Q
    |||||||||||||||||||||  |||||| |||||| ||| ||||| || ||||||||    
T  40155057 aacaatatagcatttttaaaagcaaatttatttaagggtataactagaataatgaaaa 40155114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 417
Target Start/End: Original strand, 9740646 - 9740682
Alignment:
Q  381 taacaatatagcatttttaaaaataaatttgtttaag 417  Q
    ||||||||||||||||||||||| || ||||||||||    
T  9740646 taacaatatagcatttttaaaaacaattttgtttaag 9740682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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